Strain Fitness in Variovorax sp. SCN45 around GFF7281

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7280 and GFF7281 are separated by 66 nucleotides GFF7280 - no description, at 29,667 to 29,849 GFF7280 GFF7281 - no description, at 29,916 to 30,563 GFF7281 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.984 kb on + strandat 28.984 kb on + strandat 29.143 kb on + strandat 29.144 kb on - strandat 29.144 kb on - strandat 29.147 kb on + strandat 29.208 kb on + strandat 29.209 kb on - strandat 29.209 kb on - strandat 29.217 kb on + strandat 29.218 kb on - strandat 29.221 kb on + strandat 29.260 kb on - strandat 29.260 kb on - strandat 29.261 kb on + strandat 29.262 kb on - strandat 29.263 kb on + strandat 29.263 kb on + strandat 29.263 kb on + strandat 29.263 kb on + strandat 29.263 kb on + strandat 29.263 kb on + strandat 29.264 kb on - strandat 29.357 kb on - strandat 29.398 kb on + strandat 29.399 kb on - strandat 29.481 kb on + strandat 29.481 kb on + strandat 29.481 kb on + strandat 29.481 kb on + strandat 29.482 kb on - strandat 29.482 kb on - strandat 29.483 kb on + strandat 29.483 kb on + strandat 29.483 kb on + strandat 29.484 kb on - strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.505 kb on + strandat 29.506 kb on - strandat 29.553 kb on - strandat 29.590 kb on + strandat 29.590 kb on + strandat 29.590 kb on + strandat 29.590 kb on + strandat 29.590 kb on + strandat 29.591 kb on - strandat 29.698 kb on + strand, within GFF7280at 29.698 kb on + strand, within GFF7280at 29.699 kb on - strand, within GFF7280at 29.783 kb on + strand, within GFF7280at 29.783 kb on + strand, within GFF7280at 29.784 kb on - strand, within GFF7280at 29.784 kb on - strand, within GFF7280at 29.784 kb on - strand, within GFF7280at 29.784 kb on - strand, within GFF7280at 29.913 kb on + strandat 29.913 kb on + strandat 29.913 kb on + strandat 29.914 kb on - strandat 29.914 kb on - strandat 29.914 kb on - strandat 29.956 kb on + strandat 30.025 kb on - strand, within GFF7281at 30.043 kb on + strand, within GFF7281at 30.044 kb on - strand, within GFF7281at 30.044 kb on - strand, within GFF7281at 30.049 kb on + strand, within GFF7281at 30.049 kb on + strand, within GFF7281at 30.049 kb on + strand, within GFF7281at 30.049 kb on + strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.050 kb on - strand, within GFF7281at 30.098 kb on + strand, within GFF7281at 30.099 kb on - strand, within GFF7281at 30.099 kb on - strand, within GFF7281at 30.138 kb on - strand, within GFF7281at 30.254 kb on - strand, within GFF7281at 30.289 kb on - strand, within GFF7281at 30.402 kb on + strand, within GFF7281at 30.403 kb on - strand, within GFF7281at 30.450 kb on + strand, within GFF7281at 30.450 kb on + strand, within GFF7281at 30.450 kb on + strand, within GFF7281at 30.450 kb on + strand, within GFF7281at 30.451 kb on - strand, within GFF7281at 30.451 kb on - strand, within GFF7281at 30.451 kb on - strand, within GFF7281at 30.483 kb on + strand, within GFF7281at 30.484 kb on - strand, within GFF7281at 30.576 kb on - strandat 30.576 kb on - strandat 30.576 kb on - strandat 30.584 kb on - strandat 30.634 kb on + strandat 30.634 kb on + strandat 30.635 kb on - strandat 30.649 kb on - strandat 30.665 kb on - strandat 30.665 kb on - strandat 30.665 kb on - strandat 30.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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28,984 + -0.0
28,984 + -1.0
29,143 + -1.2
29,144 - +1.6
29,144 - -0.2
29,147 + +0.2
29,208 + +0.3
29,209 - +0.4
29,209 - -0.1
29,217 + +0.2
29,218 - -0.4
29,221 + -0.7
29,260 - -0.1
29,260 - +1.1
29,261 + +0.6
29,262 - -0.2
29,263 + -0.2
29,263 + -0.1
29,263 + +0.3
29,263 + -0.8
29,263 + +0.8
29,263 + -0.3
29,264 - +2.6
29,357 - -1.9
29,398 + -2.2
29,399 - +1.4
29,481 + -1.4
29,481 + -0.0
29,481 + -1.1
29,481 + +0.4
29,482 - +0.6
29,482 - -0.0
29,483 + +0.0
29,483 + -0.4
29,483 + -1.3
29,484 - -0.9
29,505 + +0.0
29,505 + -1.1
29,505 + +0.6
29,505 + +0.6
29,505 + -1.1
29,505 + -1.1
29,505 + -0.6
29,505 + +1.6
29,505 + -0.5
29,505 + -3.1
29,505 + +0.3
29,506 - -1.8
29,553 - +0.7
29,590 + -0.5
29,590 + -0.0
29,590 + -0.3
29,590 + +0.8
29,590 + -0.8
29,591 - -0.7
29,698 + GFF7280 0.17 +0.1
29,698 + GFF7280 0.17 +0.2
29,699 - GFF7280 0.17 -0.8
29,783 + GFF7280 0.63 -1.4
29,783 + GFF7280 0.63 -0.8
29,784 - GFF7280 0.64 +0.2
29,784 - GFF7280 0.64 +0.3
29,784 - GFF7280 0.64 -0.7
29,784 - GFF7280 0.64 +0.9
29,913 + +0.6
29,913 + -1.4
29,913 + -0.5
29,914 - -0.8
29,914 - +0.2
29,914 - -0.2
29,956 + +0.6
30,025 - GFF7281 0.17 -0.1
30,043 + GFF7281 0.20 -1.0
30,044 - GFF7281 0.20 -0.1
30,044 - GFF7281 0.20 -0.4
30,049 + GFF7281 0.21 -0.7
30,049 + GFF7281 0.21 +0.2
30,049 + GFF7281 0.21 -1.3
30,049 + GFF7281 0.21 +2.4
30,050 - GFF7281 0.21 +0.2
30,050 - GFF7281 0.21 +0.8
30,050 - GFF7281 0.21 -0.3
30,050 - GFF7281 0.21 -0.1
30,050 - GFF7281 0.21 +0.4
30,050 - GFF7281 0.21 +1.1
30,050 - GFF7281 0.21 +0.2
30,050 - GFF7281 0.21 -0.4
30,050 - GFF7281 0.21 -0.1
30,050 - GFF7281 0.21 +0.3
30,050 - GFF7281 0.21 -0.2
30,098 + GFF7281 0.28 +0.6
30,099 - GFF7281 0.28 -0.6
30,099 - GFF7281 0.28 -0.5
30,138 - GFF7281 0.34 -0.2
30,254 - GFF7281 0.52 +1.0
30,289 - GFF7281 0.58 -0.3
30,402 + GFF7281 0.75 -0.4
30,403 - GFF7281 0.75 -0.4
30,450 + GFF7281 0.82 +0.0
30,450 + GFF7281 0.82 +0.8
30,450 + GFF7281 0.82 -0.2
30,450 + GFF7281 0.82 +0.9
30,451 - GFF7281 0.83 -0.8
30,451 - GFF7281 0.83 +0.4
30,451 - GFF7281 0.83 -0.0
30,483 + GFF7281 0.88 +0.6
30,484 - GFF7281 0.88 -1.9
30,576 - -0.4
30,576 - +0.6
30,576 - +1.0
30,584 - +0.4
30,634 + +0.5
30,634 + -1.8
30,635 - -0.2
30,649 - -0.0
30,665 - -0.2
30,665 - -0.6
30,665 - +0.0
30,665 - -0.8

Or see this region's nucleotide sequence