Strain Fitness in Variovorax sp. SCN45 around GFF6627

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
72,984	+		GFF6626	0.72	-0.2
73,059	+		GFF6626	0.77	-0.8
73,060	-		GFF6626	0.77	-1.4
73,124	+		GFF6626	0.81	-0.0
73,124	+		GFF6626	0.81	+1.2
73,242	+		GFF6626	0.89	-0.6
73,320	+				+0.2
73,320	+				+0.1
73,321	-				+0.6
73,352	+				-0.6
73,352	+				+1.0
73,353	-				-0.2
73,353	-				+0.4
73,354	+				+0.2
73,354	+				-1.7
73,354	+				-0.5
73,355	-				+0.6
73,576	-				-0.2
73,576	-				+0.6
73,628	+				+0.3
73,628	+				-1.8
73,628	+				+0.2
73,629	-				-1.4
73,629	-				+0.0
73,641	+				-0.5
73,641	+				+0.9
73,641	+				-0.1
73,641	+				+0.5
73,642	-				+0.4
73,642	-				+0.2
73,642	-				+0.4
73,642	-				-0.9
73,642	-				-0.3
73,642	-				+1.8
73,736	+				-0.5
73,736	+				+0.0
73,737	-				-0.5
73,737	-				+0.1
73,737	-				-0.1
73,772	-				+0.9
73,854	+				-0.7
73,855	-				+0.2
73,855	-				-0.2
73,913	+				+0.1
73,913	+				-0.7
73,913	+				-0.7
73,914	-				+2.4
73,914	-				-2.9
73,914	-				-1.9
73,958	+				-0.2
74,109	+		GFF6627	0.48	+1.7
74,109	+		GFF6627	0.48	+0.4
74,109	+		GFF6627	0.48	+0.3
74,110	-		GFF6627	0.49	+0.4
74,110	-		GFF6627	0.49	+0.1
74,110	-		GFF6627	0.49	+0.1
74,110	-		GFF6627	0.49	-0.2
74,124	+		GFF6627	0.53	-2.2
74,125	-		GFF6627	0.54	+0.8
74,125	-		GFF6627	0.54	-0.4
74,503	+				+1.6
74,504	-				+0.1
74,504	-				-2.0
74,504	-				-0.8
74,561	+				-1.1
74,562	-				-0.2
74,565	+				+0.4
74,565	+				-0.4
74,565	+				-2.4
74,565	+				-1.4
74,565	+				-0.7
74,565	+				+0.2
74,566	-				-0.5
74,566	-				-0.1
74,566	-				-0.4
74,566	-				+0.3
74,566	-				+0.4
74,566	-				-0.3
74,627	+				-0.3
74,627	+				-0.8
74,627	+				-1.3
74,628	-				-0.2
74,628	-				-2.6
74,628	-				+0.4
74,645	-		GFF6629	0.20	+1.1
74,645	-		GFF6629	0.20	+0.7
74,767	+				-0.2
74,768	-				-0.5
74,773	+				-0.3
74,773	+				-0.6
74,986	-				+0.4