Strain Fitness in Variovorax sp. SCN45 around GFF6342

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
5,368	+		GFF6341	0.29	+0.0
5,368	+		GFF6341	0.29	-0.6
5,368	+		GFF6341	0.29	-0.7
5,368	+		GFF6341	0.29	-0.1
5,368	+		GFF6341	0.29	-0.5
5,368	+		GFF6341	0.29	-0.9
5,369	-		GFF6341	0.30	+0.5
5,369	-		GFF6341	0.30	+0.3
5,369	-		GFF6341	0.30	-1.5
5,369	-		GFF6341	0.30	+0.3
5,369	-		GFF6341	0.30	+0.6
5,372	+		GFF6341	0.31	-0.7
5,372	+		GFF6341	0.31	+0.2
5,372	+		GFF6341	0.31	+0.7
5,373	-		GFF6341	0.31	+0.8
5,373	-		GFF6341	0.31	-0.6
5,373	-		GFF6341	0.31	+0.1
5,373	-		GFF6341	0.31	-1.0
5,373	-		GFF6341	0.31	+0.3
5,373	-		GFF6341	0.31	-0.7
5,397	-		GFF6341	0.41	-1.2
5,404	+		GFF6341	0.43	+1.2
5,478	+		GFF6341	0.72	-0.4
5,478	+		GFF6341	0.72	+0.2
5,478	+		GFF6341	0.72	+0.1
5,479	-		GFF6341	0.72	+0.5
5,479	-		GFF6341	0.72	+0.3
5,479	-		GFF6341	0.72	+0.1
5,494	-		GFF6341	0.78	-0.5
5,520	+		GFF6341	0.88	-0.4
5,521	-		GFF6341	0.89	-1.4
5,595	+				-0.1
5,595	+				-0.5
5,596	-				+0.5
5,596	-				+1.1
5,596	-				+0.8
5,596	-				-0.0
5,796	+				-0.5
5,797	-				+0.1
5,810	-				+0.2
5,865	+				+1.0
5,865	+				-0.6
5,866	-				+0.6
5,930	+				-0.7
5,931	-				-0.7
5,931	-				+0.4
5,931	-				+0.1
5,931	-				+1.0
5,988	+				+0.5
5,988	+				-0.5
5,989	-				-0.3
5,989	-				-0.2
5,989	-				-0.9
6,044	+				+0.3
6,045	-				+0.6
6,052	+				-2.0
6,052	+				-0.4
6,053	-				+1.0
6,053	-				-0.6
6,053	-				+0.3
6,053	-				-0.4
6,061	+				-0.7
6,061	+				-0.0
6,080	-				-0.1
6,080	-				+0.3
6,080	-				+0.2
6,103	+				-1.1
6,104	-				-0.4
6,104	-				+0.1
6,104	-				-0.2
6,213	+				+3.8
6,213	+				+0.3
6,214	-				+1.0
6,214	-				-0.5
6,214	-				-0.1
6,214	-				+0.2
6,214	-				+0.1
6,263	+				-0.6
6,263	+				+1.0
6,263	+				+0.3
6,263	+				+0.0
6,263	+				+0.1
6,263	+				+0.7
6,263	+				+0.8
6,263	+				-0.4
6,263	+				+1.6
6,263	+				-0.4
6,263	+				-0.6
6,264	-				+1.3
6,264	-				+0.8
6,264	-				+0.0
6,264	-				+0.4
6,264	-				+0.1
6,278	+				-0.1
6,278	+				-0.3
6,278	+				-0.5
6,278	+				-0.3
6,278	+				-0.2
6,278	+				+0.1
6,278	+				+1.0
6,279	-				+1.1
6,279	-				+0.8
6,350	-				-0.1
6,360	+				-0.0
6,360	+				-1.7
6,360	+				-0.1
6,360	+				-0.1
6,360	+				-0.3
6,360	+				+0.0
6,360	+				-0.3
6,360	+				+0.4
6,361	-				+0.6
6,361	-				-0.1
6,420	+		GFF6342	0.21	+1.1
6,420	+		GFF6342	0.21	+0.6
6,421	-		GFF6342	0.21	-0.8
6,421	-		GFF6342	0.21	+0.2
6,421	-		GFF6342	0.21	+1.3
6,427	+		GFF6342	0.23	+0.2
6,427	+		GFF6342	0.23	-0.0
6,428	-		GFF6342	0.23	+0.4
6,637	+		GFF6342	0.82	+0.8
6,637	+		GFF6342	0.82	+1.8
6,637	+		GFF6342	0.82	-0.5
6,637	+		GFF6342	0.82	-0.3
6,637	+		GFF6342	0.82	+0.5
6,638	-		GFF6342	0.83	+0.2
6,638	-		GFF6342	0.83	-0.2
6,638	-		GFF6342	0.83	-0.1
6,638	-		GFF6342	0.83	+0.2
6,638	-		GFF6342	0.83	+1.0
6,638	-		GFF6342	0.83	-1.5
6,678	+				-2.5
6,679	-				-0.5
6,733	+		GFF6343	0.13	+0.1
6,734	-		GFF6343	0.14	-0.4
6,959	+				-0.0
7,134	+				-1.5
7,295	+				-0.2
7,317	+				+0.2
7,318	-				+0.4
7,318	-				-0.4
7,318	-				-0.1
7,340	+				+1.1
7,340	+				-1.4
7,340	+				-0.1
7,340	+				+0.6
7,340	+				-0.1
7,340	+				+0.2
7,340	+				-0.3
7,340	+				+1.0
7,340	+				+0.4
7,340	+				+0.1
7,340	+				-0.5
7,341	-				-0.6
7,341	-				-1.1
7,341	-				+0.7
7,423	+		GFF6344	0.14	+1.2
7,423	+		GFF6344	0.14	+0.9
7,530	-		GFF6344	0.22	-1.2
7,628	-		GFF6344	0.29	-0.3