Strain Fitness in Variovorax sp. SCN45 around GFF6290

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
78,558	+		GFF6289	0.45	+0.4
78,558	+		GFF6289	0.45	-1.6
78,558	+		GFF6289	0.45	-1.7
78,558	+		GFF6289	0.45	+0.6
78,559	-		GFF6289	0.45	+0.2
78,559	-		GFF6289	0.45	-1.6
78,559	-		GFF6289	0.45	+0.4
78,559	-		GFF6289	0.45	-0.0
78,559	-		GFF6289	0.45	-0.2
78,671	-		GFF6289	0.52	+1.2
78,756	+		GFF6289	0.57	+1.1
78,756	+		GFF6289	0.57	-0.3
78,756	+		GFF6289	0.57	-1.3
78,756	+		GFF6289	0.57	+0.9
78,756	+		GFF6289	0.57	-0.3
78,756	+		GFF6289	0.57	+0.4
78,756	+		GFF6289	0.57	-0.5
78,756	+		GFF6289	0.57	+0.5
78,756	+		GFF6289	0.57	+0.1
78,756	+		GFF6289	0.57	-0.0
78,756	+		GFF6289	0.57	-1.1
78,756	+		GFF6289	0.57	-0.1
78,756	+		GFF6289	0.57	-0.2
78,756	+		GFF6289	0.57	-0.3
78,756	+		GFF6289	0.57	-0.3
78,757	-		GFF6289	0.58	+0.2
78,757	-		GFF6289	0.58	+0.6
78,757	-		GFF6289	0.58	+0.1
78,757	-		GFF6289	0.58	-0.2
78,757	-		GFF6289	0.58	-0.0
78,757	-		GFF6289	0.58	+0.5
78,757	-		GFF6289	0.58	-0.2
78,757	-		GFF6289	0.58	+0.0
78,757	-		GFF6289	0.58	-1.0
78,757	-		GFF6289	0.58	-0.2
78,757	-		GFF6289	0.58	+0.1
78,757	-		GFF6289	0.58	-0.7
78,757	-		GFF6289	0.58	+0.9
78,757	-		GFF6289	0.58	-0.4
78,757	-		GFF6289	0.58	+0.4
78,757	-		GFF6289	0.58	-0.4
78,757	-		GFF6289	0.58	+0.8
78,757	-		GFF6289	0.58	-0.1
78,757	-		GFF6289	0.58	-1.1
78,757	-		GFF6289	0.58	-0.2
78,757	-		GFF6289	0.58	-1.4
78,757	-		GFF6289	0.58	+0.8
78,757	-		GFF6289	0.58	+0.1
78,757	-		GFF6289	0.58	+0.3
78,757	-		GFF6289	0.58	-0.3
78,757	-		GFF6289	0.58	-0.3
78,757	-		GFF6289	0.58	+0.5
78,757	-		GFF6289	0.58	+0.1
78,757	-		GFF6289	0.58	+0.1
78,757	-		GFF6289	0.58	-0.3
78,757	-		GFF6289	0.58	-0.6
78,757	-		GFF6289	0.58	-0.0
78,757	-		GFF6289	0.58	-0.1
78,771	+		GFF6289	0.58	-0.4
78,771	+		GFF6289	0.58	+2.3
78,772	-		GFF6289	0.58	+0.4
78,772	-		GFF6289	0.58	-0.3
78,864	+		GFF6289	0.64	-0.1
78,864	+		GFF6289	0.64	+0.6
78,864	+		GFF6289	0.64	-0.7
78,864	+		GFF6289	0.64	+0.0
78,864	+		GFF6289	0.64	-0.3
78,865	-		GFF6289	0.64	+1.1
78,865	-		GFF6289	0.64	-0.4
78,865	-		GFF6289	0.64	-1.3
78,865	-		GFF6289	0.64	-0.2
78,865	-		GFF6289	0.64	+0.9
78,865	-		GFF6289	0.64	-0.5
78,865	-		GFF6289	0.64	+0.4
78,865	-		GFF6289	0.64	+0.1
78,865	-		GFF6289	0.64	-0.7
79,083	+		GFF6289	0.78	-0.5
79,083	+		GFF6289	0.78	+1.7
79,083	+		GFF6289	0.78	-0.5
79,083	+		GFF6289	0.78	+1.3
79,083	+		GFF6289	0.78	-0.1
79,083	+		GFF6289	0.78	+0.1
79,083	+		GFF6289	0.78	-1.1
79,083	+		GFF6289	0.78	+1.4
79,083	+		GFF6289	0.78	-0.0
79,083	+		GFF6289	0.78	-1.3
79,083	+		GFF6289	0.78	-0.9
79,083	+		GFF6289	0.78	-0.2
79,083	+		GFF6289	0.78	-0.0
79,083	+		GFF6289	0.78	+1.2
79,083	+		GFF6289	0.78	-0.5
79,083	+		GFF6289	0.78	-0.1
79,084	-		GFF6289	0.78	-0.3
79,084	-		GFF6289	0.78	-0.2
79,084	-		GFF6289	0.78	-0.9
79,084	-		GFF6289	0.78	-0.6
79,084	-		GFF6289	0.78	-0.0
79,084	-		GFF6289	0.78	-0.3
79,084	-		GFF6289	0.78	-0.5
79,084	-		GFF6289	0.78	+1.0
79,084	-		GFF6289	0.78	-1.6
79,084	-		GFF6289	0.78	-0.9
79,084	-		GFF6289	0.78	-1.7
79,084	-		GFF6289	0.78	-0.9
79,084	-		GFF6289	0.78	-0.5
79,084	-		GFF6289	0.78	-0.1
79,084	-		GFF6289	0.78	-0.7
79,084	-		GFF6289	0.78	+0.6
79,152	+		GFF6289	0.83	+0.2
79,152	+		GFF6289	0.83	-0.4
79,153	-		GFF6289	0.83	+0.7
79,153	-		GFF6289	0.83	+1.2
79,182	+		GFF6289	0.85	+1.6
79,182	+		GFF6289	0.85	+1.3
79,182	+		GFF6289	0.85	-0.8
79,183	-		GFF6289	0.85	-0.1
79,183	-		GFF6289	0.85	-0.5
79,183	-		GFF6289	0.85	-0.3
79,183	-		GFF6289	0.85	-0.7
79,183	-		GFF6289	0.85	-1.3
79,183	-		GFF6289	0.85	-1.2
79,183	-		GFF6289	0.85	-0.2
79,183	-		GFF6289	0.85	+0.3
79,185	+		GFF6289	0.85	+0.2
79,185	+		GFF6289	0.85	-0.7
79,185	+		GFF6289	0.85	-0.2
79,185	+		GFF6289	0.85	-0.5
79,185	+		GFF6289	0.85	-1.6
79,185	+		GFF6289	0.85	+0.4
79,185	+		GFF6289	0.85	+1.0
79,185	+		GFF6289	0.85	+0.2
79,185	+		GFF6289	0.85	-0.0
79,185	+		GFF6289	0.85	+0.3
79,186	-		GFF6289	0.85	+0.0
79,186	-		GFF6289	0.85	-0.2
79,186	-		GFF6289	0.85	+1.7
79,186	-		GFF6289	0.85	+0.3
79,186	-		GFF6289	0.85	+0.2
79,186	-		GFF6289	0.85	-0.9
79,186	-		GFF6289	0.85	-0.6
79,186	-		GFF6289	0.85	+0.3
79,186	-		GFF6289	0.85	-1.1
79,186	-		GFF6289	0.85	+0.3
79,186	-		GFF6289	0.85	-0.6
79,186	-		GFF6289	0.85	-1.2
79,186	-		GFF6289	0.85	+0.1
79,186	-		GFF6289	0.85	-2.2
79,186	-		GFF6289	0.85	-0.4
79,537	+				-0.1
79,537	+				+0.2
79,537	+				+0.6
79,537	+				-0.4
79,537	+				+1.7
79,537	+				+2.3
79,538	-				+0.7
79,538	-				+0.1
79,550	+				-2.1
79,550	+				-0.1
79,550	+				+0.1
79,550	+				-0.4
79,550	+				-0.4
79,551	-				+1.5
79,551	-				-0.5
79,551	-				-0.2
79,551	-				+0.7
79,551	-				-0.8
79,559	+				-0.0
79,559	+				-0.2
79,559	+				-0.4
79,559	+				-0.7
79,559	+				-0.7
79,559	+				+0.3
79,559	+				-1.3
79,559	+				+0.1
79,559	+				+0.2
79,559	+				-0.5
79,559	+				+0.8
79,559	+				-1.4
79,559	+				-1.1
79,559	+				+1.9
79,559	+				-1.1
79,559	+				-2.4
79,559	+				-0.1
79,560	-				-1.4
79,560	-				+0.8
79,560	-				-0.2
79,560	-				-0.0
79,560	-				+0.1
79,560	-				-0.3
79,560	-				+1.2
79,560	-				-0.2
79,560	-				-0.2
79,560	-				-0.5
79,560	-				-0.1
79,590	+				-1.3
79,590	+				-1.4
79,591	-				-2.4
79,591	-				-1.4
79,607	+				-2.4
79,607	+				-1.3
79,607	+				-2.3
79,607	+				-1.2
79,608	-				-0.3
79,608	-				-1.1
79,608	-				-0.6
79,787	+		GFF6290	0.14	-0.6
79,787	+		GFF6290	0.14	-2.4
79,787	+		GFF6290	0.14	-1.7
79,787	+		GFF6290	0.14	-1.2
79,787	+		GFF6290	0.14	-1.5
79,787	+		GFF6290	0.14	-0.9
79,787	+		GFF6290	0.14	+0.3
79,788	-		GFF6290	0.14	-0.8
79,788	-		GFF6290	0.14	-0.7
79,788	-		GFF6290	0.14	-0.9
79,823	+		GFF6290	0.17	-1.3
79,823	+		GFF6290	0.17	-1.5
79,823	+		GFF6290	0.17	-0.3
79,823	+		GFF6290	0.17	-1.0
79,823	+		GFF6290	0.17	-0.9
79,823	+		GFF6290	0.17	-1.8
79,823	+		GFF6290	0.17	-0.8
79,823	+		GFF6290	0.17	-0.4
79,823	+		GFF6290	0.17	-1.3
79,823	+		GFF6290	0.17	-1.3
79,823	+		GFF6290	0.17	-1.4
79,823	+		GFF6290	0.17	-0.5
79,823	+		GFF6290	0.17	+0.8
79,823	+		GFF6290	0.17	+0.1
79,823	+		GFF6290	0.17	-1.1
79,823	+		GFF6290	0.17	-0.6
79,823	+		GFF6290	0.17	-0.9
79,823	+		GFF6290	0.17	-0.3
79,823	+		GFF6290	0.17	-0.9
79,823	+		GFF6290	0.17	+0.5
79,823	+		GFF6290	0.17	-3.1
79,823	+		GFF6290	0.17	-0.7
79,823	+		GFF6290	0.17	-0.7
79,823	+		GFF6290	0.17	+1.0
79,823	+		GFF6290	0.17	-1.4
79,823	+		GFF6290	0.17	-0.3
79,823	+		GFF6290	0.17	-1.1
79,823	+		GFF6290	0.17	+0.1
79,823	+		GFF6290	0.17	+0.4
79,823	+		GFF6290	0.17	-1.0
79,823	+		GFF6290	0.17	-1.1
79,824	-		GFF6290	0.17	-3.0
79,824	-		GFF6290	0.17	-1.1
79,824	-		GFF6290	0.17	+0.5
79,824	-		GFF6290	0.17	+0.4
79,824	-		GFF6290	0.17	-0.2
79,824	-		GFF6290	0.17	-2.1
79,824	-		GFF6290	0.17	-1.1
79,824	-		GFF6290	0.17	-0.7
79,824	-		GFF6290	0.17	-1.1
79,824	-		GFF6290	0.17	+0.2
79,824	-		GFF6290	0.17	-0.9
79,824	-		GFF6290	0.17	-0.3
79,824	-		GFF6290	0.17	+0.2
79,824	-		GFF6290	0.17	-2.1
79,824	-		GFF6290	0.17	-1.0
79,824	-		GFF6290	0.17	-1.6
79,824	-		GFF6290	0.17	-1.5
79,824	-		GFF6290	0.17	-2.5
79,824	-		GFF6290	0.17	-0.1
79,824	-		GFF6290	0.17	+0.4
79,824	-		GFF6290	0.17	+0.9
79,824	-		GFF6290	0.17	-1.2
79,824	-		GFF6290	0.17	-1.1
79,824	-		GFF6290	0.17	-1.3
79,928	+		GFF6290	0.23	+0.2
79,928	+		GFF6290	0.23	+0.5
79,928	+		GFF6290	0.23	-0.4
79,928	+		GFF6290	0.23	-1.3
79,928	+		GFF6290	0.23	-0.1
79,928	+		GFF6290	0.23	-0.9
79,928	+		GFF6290	0.23	+0.1
79,928	+		GFF6290	0.23	-1.0
79,929	-		GFF6290	0.23	-0.8
79,929	-		GFF6290	0.23	-0.6
79,929	-		GFF6290	0.23	-1.1
79,929	-		GFF6290	0.23	-1.1
79,929	-		GFF6290	0.23	-1.2
79,929	-		GFF6290	0.23	+0.1
79,929	-		GFF6290	0.23	-2.2
79,929	-		GFF6290	0.23	+0.0
79,929	-		GFF6290	0.23	-0.2
79,929	-		GFF6290	0.23	+0.4
79,929	-		GFF6290	0.23	-1.5
79,929	-		GFF6290	0.23	-0.8
79,929	-		GFF6290	0.23	-0.6
79,929	-		GFF6290	0.23	-0.9
79,929	-		GFF6290	0.23	+0.9
79,929	-		GFF6290	0.23	-0.1
79,929	-		GFF6290	0.23	-0.9
80,078	+		GFF6290	0.32	-0.3
80,078	+		GFF6290	0.32	-2.2
80,078	+		GFF6290	0.32	-1.4
80,078	+		GFF6290	0.32	-0.3
80,078	+		GFF6290	0.32	-0.9
80,078	+		GFF6290	0.32	-1.3
80,078	+		GFF6290	0.32	-0.3
80,078	+		GFF6290	0.32	+0.7
80,078	+		GFF6290	0.32	-0.2
80,078	+		GFF6290	0.32	-1.4
80,078	+		GFF6290	0.32	-1.6
80,078	+		GFF6290	0.32	-0.3
80,078	+		GFF6290	0.32	+0.2
80,078	+		GFF6290	0.32	+1.0
80,078	+		GFF6290	0.32	-1.7
80,078	+		GFF6290	0.32	-1.2
80,078	+		GFF6290	0.32	-1.3
80,078	+		GFF6290	0.32	-0.6
80,078	+		GFF6290	0.32	-1.2
80,078	+		GFF6290	0.32	-2.7
80,078	+		GFF6290	0.32	-0.4
80,078	+		GFF6290	0.32	-0.0
80,078	+		GFF6290	0.32	-1.1
80,078	+		GFF6290	0.32	-0.2
80,078	+		GFF6290	0.32	+0.2
80,078	+		GFF6290	0.32	-0.8
80,079	-		GFF6290	0.33	-1.0
80,079	-		GFF6290	0.33	+0.4
80,079	-		GFF6290	0.33	+0.6
80,079	-		GFF6290	0.33	-0.5
80,079	-		GFF6290	0.33	-0.6
80,079	-		GFF6290	0.33	-2.4
80,079	-		GFF6290	0.33	-0.3
80,079	-		GFF6290	0.33	-0.3
80,079	-		GFF6290	0.33	-1.3
80,079	-		GFF6290	0.33	+0.1
80,079	-		GFF6290	0.33	-1.3
80,079	-		GFF6290	0.33	-1.4
80,079	-		GFF6290	0.33	-1.0
80,079	-		GFF6290	0.33	-2.1
80,079	-		GFF6290	0.33	-1.4
80,079	-		GFF6290	0.33	-1.5
80,079	-		GFF6290	0.33	-0.3
80,079	-		GFF6290	0.33	-1.0
80,079	-		GFF6290	0.33	-0.9
80,079	-		GFF6290	0.33	-1.1
80,079	-		GFF6290	0.33	-1.3
80,079	-		GFF6290	0.33	-0.2
80,360	+		GFF6290	0.50	-0.7
80,360	+		GFF6290	0.50	-1.4
80,360	+		GFF6290	0.50	-0.5
80,360	+		GFF6290	0.50	-0.8
80,360	+		GFF6290	0.50	-1.5
80,360	+		GFF6290	0.50	-1.3
80,360	+		GFF6290	0.50	-0.6
80,360	+		GFF6290	0.50	-1.3
80,360	+		GFF6290	0.50	-1.0
80,360	+		GFF6290	0.50	-0.0
80,360	+		GFF6290	0.50	-0.4
80,360	+		GFF6290	0.50	-0.5
80,360	+		GFF6290	0.50	-1.4
80,361	-		GFF6290	0.50	-0.6
80,361	-		GFF6290	0.50	-1.5
80,361	-		GFF6290	0.50	+1.0
80,361	-		GFF6290	0.50	-2.7
80,361	-		GFF6290	0.50	+0.1
80,361	-		GFF6290	0.50	-2.3
80,361	-		GFF6290	0.50	-2.1
80,361	-		GFF6290	0.50	+0.1
80,361	-		GFF6290	0.50	-1.1
80,361	-		GFF6290	0.50	-1.7
80,361	-		GFF6290	0.50	+0.0
80,361	-		GFF6290	0.50	-2.3
80,582	+		GFF6290	0.64	-1.1
80,582	+		GFF6290	0.64	-0.2
80,583	-		GFF6290	0.64	-0.1
80,583	-		GFF6290	0.64	-1.5
80,583	-		GFF6290	0.64	-1.5
80,871	+		GFF6290	0.82	-0.3
80,871	+		GFF6290	0.82	-1.5
80,871	+		GFF6290	0.82	-0.7
80,871	+		GFF6290	0.82	-0.9
80,871	+		GFF6290	0.82	+1.1
80,872	-		GFF6290	0.82	-0.7
80,872	-		GFF6290	0.82	-2.7
80,872	-		GFF6290	0.82	-0.0
80,872	-		GFF6290	0.82	+0.7
81,178	+				+0.0
81,178	+				+1.2
81,178	+				+0.3
81,178	+				-1.0
81,178	+				-0.7
81,178	+				+0.2
81,178	+				-0.1
81,178	+				+1.0
81,178	+				-0.3
81,178	+				+0.9
81,178	+				-1.1
81,178	+				-0.1
81,178	+				-0.3
81,178	+				+0.7
81,178	+				+0.1
81,178	+				-0.5
81,178	+				-0.0
81,178	+				+0.2
81,179	-				-0.3
81,179	-				-0.3
81,179	-				-0.6
81,179	-				+0.4
81,179	-				-0.5
81,179	-				-0.7
81,179	-				-0.4
81,179	-				-0.7
81,179	-				+2.5
81,179	-				-0.4
81,179	-				-0.0
81,179	-				+0.0
81,179	-				-1.1
81,179	-				+0.1
81,179	-				+0.2
81,179	-				+0.1
81,179	-				-0.2
81,179	-				-1.5
81,179	-				-0.6
81,179	-				-0.9
81,179	-				+0.6
81,179	-				-0.1
81,179	-				+0.1
81,179	-				+0.3
81,179	-				-1.7
81,179	-				+0.2
81,984	-				-0.3