Strain Fitness in Variovorax sp. SCN45 around GFF6237

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6236 and GFF6237 overlap by 1 nucleotidesGFF6237 and GFF6238 overlap by 1 nucleotides GFF6236 - VgrG protein, at 26,092 to 28,746 GFF6236 GFF6237 - hypothetical protein, at 28,746 to 29,813 GFF6237 GFF6238 - hypothetical protein, at 29,813 to 31,132 GFF6238 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 28.069 kb on - strand, within GFF6236at 28.447 kb on + strand, within GFF6236at 28.448 kb on - strand, within GFF6236at 28.487 kb on - strandat 28.487 kb on - strandat 28.493 kb on - strandat 28.578 kb on - strandat 28.578 kb on - strandat 28.578 kb on - strandat 28.578 kb on - strandat 28.598 kb on - strandat 28.598 kb on - strandat 28.598 kb on - strandat 28.695 kb on - strandat 28.745 kb on - strandat 28.745 kb on - strandat 28.754 kb on - strandat 28.836 kb on + strandat 28.837 kb on - strandat 28.837 kb on - strandat 28.837 kb on - strandat 29.355 kb on + strand, within GFF6237at 29.356 kb on - strand, within GFF6237at 29.381 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.430 kb on + strand, within GFF6237at 29.437 kb on - strand, within GFF6237at 29.478 kb on + strand, within GFF6237at 29.507 kb on + strand, within GFF6237at 29.507 kb on + strand, within GFF6237at 29.572 kb on - strand, within GFF6237at 29.572 kb on - strand, within GFF6237at 29.793 kb on - strandat 29.793 kb on - strandat 29.793 kb on - strandat 29.793 kb on - strandat 29.807 kb on + strandat 29.808 kb on - strandat 29.895 kb on - strandat 29.895 kb on - strandat 29.930 kb on + strandat 29.931 kb on - strandat 29.931 kb on - strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.942 kb on + strandat 29.943 kb on - strandat 29.943 kb on - strandat 29.948 kb on + strand, within GFF6238at 29.948 kb on + strand, within GFF6238at 29.948 kb on + strand, within GFF6238at 29.949 kb on - strand, within GFF6238at 29.966 kb on + strand, within GFF6238at 29.966 kb on + strand, within GFF6238at 29.967 kb on - strand, within GFF6238at 29.967 kb on - strand, within GFF6238at 29.967 kb on - strand, within GFF6238at 30.144 kb on - strand, within GFF6238at 30.146 kb on + strand, within GFF6238at 30.189 kb on + strand, within GFF6238at 30.197 kb on + strand, within GFF6238at 30.197 kb on + strand, within GFF6238at 30.198 kb on - strand, within GFF6238at 30.233 kb on + strand, within GFF6238at 30.234 kb on - strand, within GFF6238at 30.234 kb on - strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.344 kb on + strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.345 kb on - strand, within GFF6238at 30.353 kb on + strand, within GFF6238at 30.353 kb on + strand, within GFF6238at 30.392 kb on + strand, within GFF6238at 30.393 kb on - strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.417 kb on + strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.418 kb on - strand, within GFF6238at 30.428 kb on + strand, within GFF6238at 30.428 kb on + strand, within GFF6238at 30.500 kb on + strand, within GFF6238at 30.500 kb on + strand, within GFF6238at 30.501 kb on - strand, within GFF6238

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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28,069 - GFF6236 0.74 +0.9
28,447 + GFF6236 0.89 +0.1
28,448 - GFF6236 0.89 -0.1
28,487 - -0.5
28,487 - -0.1
28,493 - +0.6
28,578 - +0.4
28,578 - -0.5
28,578 - +0.9
28,578 - -0.1
28,598 - +0.4
28,598 - -0.8
28,598 - -0.9
28,695 - -0.5
28,745 - -0.6
28,745 - +0.6
28,754 - -2.3
28,836 + +0.4
28,837 - +0.0
28,837 - -0.5
28,837 - +0.5
29,355 + GFF6237 0.57 +0.3
29,356 - GFF6237 0.57 +0.3
29,381 - GFF6237 0.59 +0.7
29,419 - GFF6237 0.63 -0.0
29,419 - GFF6237 0.63 +0.3
29,419 - GFF6237 0.63 -0.6
29,430 + GFF6237 0.64 -0.2
29,437 - GFF6237 0.65 +0.8
29,478 + GFF6237 0.69 -0.0
29,507 + GFF6237 0.71 +0.0
29,507 + GFF6237 0.71 -0.1
29,572 - GFF6237 0.77 +0.2
29,572 - GFF6237 0.77 +0.0
29,793 - -0.3
29,793 - -0.8
29,793 - -0.4
29,793 - -0.0
29,807 + +0.1
29,808 - -0.5
29,895 - -2.3
29,895 - +0.2
29,930 + -0.3
29,931 - -0.4
29,931 - +0.6
29,942 + -0.1
29,942 + -1.5
29,942 + -0.5
29,942 + +0.2
29,942 + -0.5
29,942 + -0.4
29,942 + -0.2
29,943 - +0.6
29,943 - -0.4
29,948 + GFF6238 0.10 -0.3
29,948 + GFF6238 0.10 +0.3
29,948 + GFF6238 0.10 -0.7
29,949 - GFF6238 0.10 +0.7
29,966 + GFF6238 0.12 -1.1
29,966 + GFF6238 0.12 -0.0
29,967 - GFF6238 0.12 +0.7
29,967 - GFF6238 0.12 -0.9
29,967 - GFF6238 0.12 +0.1
30,144 - GFF6238 0.25 -1.0
30,146 + GFF6238 0.25 -0.3
30,189 + GFF6238 0.28 -0.3
30,197 + GFF6238 0.29 -0.7
30,197 + GFF6238 0.29 -0.5
30,198 - GFF6238 0.29 +0.4
30,233 + GFF6238 0.32 -1.3
30,234 - GFF6238 0.32 +0.1
30,234 - GFF6238 0.32 +0.6
30,344 + GFF6238 0.40 +0.5
30,344 + GFF6238 0.40 -0.1
30,344 + GFF6238 0.40 +1.0
30,344 + GFF6238 0.40 +0.1
30,344 + GFF6238 0.40 -0.9
30,344 + GFF6238 0.40 -0.5
30,344 + GFF6238 0.40 -0.5
30,344 + GFF6238 0.40 -0.2
30,344 + GFF6238 0.40 +0.2
30,344 + GFF6238 0.40 +1.5
30,344 + GFF6238 0.40 -0.5
30,344 + GFF6238 0.40 -2.1
30,345 - GFF6238 0.40 -0.6
30,345 - GFF6238 0.40 -0.6
30,345 - GFF6238 0.40 -2.1
30,345 - GFF6238 0.40 -1.7
30,345 - GFF6238 0.40 -0.4
30,345 - GFF6238 0.40 -0.2
30,345 - GFF6238 0.40 -1.7
30,345 - GFF6238 0.40 +2.7
30,353 + GFF6238 0.41 -0.2
30,353 + GFF6238 0.41 -0.3
30,392 + GFF6238 0.44 -0.2
30,393 - GFF6238 0.44 +0.1
30,417 + GFF6238 0.46 +0.0
30,417 + GFF6238 0.46 -0.2
30,417 + GFF6238 0.46 -0.1
30,417 + GFF6238 0.46 +1.1
30,417 + GFF6238 0.46 -0.5
30,417 + GFF6238 0.46 +0.1
30,418 - GFF6238 0.46 +0.4
30,418 - GFF6238 0.46 +1.0
30,418 - GFF6238 0.46 -1.3
30,418 - GFF6238 0.46 +1.0
30,418 - GFF6238 0.46 +0.5
30,418 - GFF6238 0.46 +0.0
30,428 + GFF6238 0.47 +1.0
30,428 + GFF6238 0.47 +0.1
30,500 + GFF6238 0.52 -0.7
30,500 + GFF6238 0.52 -0.4
30,501 - GFF6238 0.52 +0.6

Or see this region's nucleotide sequence