Strain Fitness in Variovorax sp. SCN45 around GFF6191

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6190 and GFF6191 are separated by 9 nucleotidesGFF6191 and GFF6192 are separated by 24 nucleotides GFF6190 - 3-hydroxyisobutyrate dehydrogenase family protein, at 95,786 to 96,676 GFF6190 GFF6191 - Aldehyde dehydrogenase (EC 1.2.1.3), at 96,686 to 98,134 GFF6191 GFF6192 - Amidase family protein Atu4441, at 98,159 to 99,562 GFF6192 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -1 0 1 2 3at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.919 kb on + strand, within GFF6190at 95.919 kb on + strand, within GFF6190at 95.920 kb on - strand, within GFF6190at 95.920 kb on - strand, within GFF6190at 95.920 kb on - strand, within GFF6190at 96.794 kb on + strandat 96.794 kb on + strandat 96.794 kb on + strandat 96.794 kb on + strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.813 kb on + strandat 96.813 kb on + strandat 96.813 kb on + strandat 96.814 kb on - strandat 96.887 kb on + strand, within GFF6191at 96.888 kb on - strand, within GFF6191at 97.041 kb on + strand, within GFF6191at 97.041 kb on + strand, within GFF6191at 97.041 kb on + strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.044 kb on + strand, within GFF6191at 97.045 kb on - strand, within GFF6191at 97.242 kb on + strand, within GFF6191at 97.675 kb on - strand, within GFF6191at 97.675 kb on - strand, within GFF6191at 97.735 kb on - strand, within GFF6191at 97.735 kb on - strand, within GFF6191at 97.746 kb on + strand, within GFF6191at 97.746 kb on + strand, within GFF6191at 97.746 kb on + strand, within GFF6191at 97.747 kb on - strand, within GFF6191at 97.789 kb on - strand, within GFF6191at 97.789 kb on - strand, within GFF6191at 97.789 kb on - strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.801 kb on - strand, within GFF6191at 97.801 kb on - strand, within GFF6191at 98.289 kb on + strandat 98.331 kb on + strand, within GFF6192at 98.331 kb on + strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.493 kb on + strand, within GFF6192at 98.553 kb on + strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.943 kb on + strand, within GFF6192at 98.944 kb on - strand, within GFF6192at 98.944 kb on - strand, within GFF6192at 98.944 kb on - strand, within GFF6192at 98.989 kb on - strand, within GFF6192at 98.989 kb on - strand, within GFF6192at 98.989 kb on - strand, within GFF6192

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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95,916 + GFF6190 0.15 +2.8
95,916 + GFF6190 0.15 +3.0
95,916 + GFF6190 0.15 +2.5
95,916 + GFF6190 0.15 +2.0
95,916 + GFF6190 0.15 +3.2
95,916 + GFF6190 0.15 +2.6
95,916 + GFF6190 0.15 +2.8
95,917 - GFF6190 0.15 +3.2
95,917 - GFF6190 0.15 +2.7
95,917 - GFF6190 0.15 +2.9
95,917 - GFF6190 0.15 +3.1
95,917 - GFF6190 0.15 +0.4
95,917 - GFF6190 0.15 +2.4
95,917 - GFF6190 0.15 +3.0
95,917 - GFF6190 0.15 +2.9
95,919 + GFF6190 0.15 +3.3
95,919 + GFF6190 0.15 +3.3
95,920 - GFF6190 0.15 +2.5
95,920 - GFF6190 0.15 +2.5
95,920 - GFF6190 0.15 +2.8
96,794 + +1.0
96,794 + +1.5
96,794 + -0.2
96,794 + +1.4
96,795 - +0.1
96,795 - -0.1
96,795 - +2.4
96,795 - +0.2
96,795 - +1.1
96,813 + +0.2
96,813 + -0.1
96,813 + +1.1
96,814 - +0.6
96,887 + GFF6191 0.14 -0.1
96,888 - GFF6191 0.14 +1.1
97,041 + GFF6191 0.24 +0.2
97,041 + GFF6191 0.24 +0.9
97,041 + GFF6191 0.24 -0.1
97,042 - GFF6191 0.25 +0.5
97,042 - GFF6191 0.25 +0.1
97,042 - GFF6191 0.25 +1.3
97,042 - GFF6191 0.25 +1.3
97,044 + GFF6191 0.25 +1.0
97,045 - GFF6191 0.25 +0.4
97,242 + GFF6191 0.38 +0.9
97,675 - GFF6191 0.68 +0.8
97,675 - GFF6191 0.68 +0.2
97,735 - GFF6191 0.72 +0.4
97,735 - GFF6191 0.72 +0.6
97,746 + GFF6191 0.73 +0.9
97,746 + GFF6191 0.73 +0.3
97,746 + GFF6191 0.73 +1.0
97,747 - GFF6191 0.73 +1.1
97,789 - GFF6191 0.76 +1.4
97,789 - GFF6191 0.76 +3.0
97,789 - GFF6191 0.76 +0.9
97,791 + GFF6191 0.76 +0.5
97,791 + GFF6191 0.76 +3.1
97,791 + GFF6191 0.76 +0.7
97,791 + GFF6191 0.76 +0.9
97,791 + GFF6191 0.76 +1.9
97,791 + GFF6191 0.76 +0.4
97,792 - GFF6191 0.76 -1.4
97,792 - GFF6191 0.76 +2.6
97,792 - GFF6191 0.76 +0.1
97,792 - GFF6191 0.76 +1.1
97,792 - GFF6191 0.76 +0.8
97,792 - GFF6191 0.76 +1.4
97,792 - GFF6191 0.76 +0.1
97,792 - GFF6191 0.76 +0.8
97,792 - GFF6191 0.76 +1.1
97,792 - GFF6191 0.76 +0.1
97,792 - GFF6191 0.76 +1.5
97,792 - GFF6191 0.76 +0.6
97,801 - GFF6191 0.77 +0.5
97,801 - GFF6191 0.77 +0.8
98,289 + +0.6
98,331 + GFF6192 0.12 +0.5
98,331 + GFF6192 0.12 +0.1
98,332 - GFF6192 0.12 +0.2
98,332 - GFF6192 0.12 +0.9
98,332 - GFF6192 0.12 -0.4
98,332 - GFF6192 0.12 +1.1
98,332 - GFF6192 0.12 +0.5
98,493 + GFF6192 0.24 +0.6
98,553 + GFF6192 0.28 +0.2
98,554 - GFF6192 0.28 +1.0
98,554 - GFF6192 0.28 +0.9
98,554 - GFF6192 0.28 -1.7
98,554 - GFF6192 0.28 +0.5
98,943 + GFF6192 0.56 +1.0
98,944 - GFF6192 0.56 +1.1
98,944 - GFF6192 0.56 +2.7
98,944 - GFF6192 0.56 +1.2
98,989 - GFF6192 0.59 +0.2
98,989 - GFF6192 0.59 +0.6
98,989 - GFF6192 0.59 +1.9

Or see this region's nucleotide sequence