Strain Fitness in Variovorax sp. SCN45 around GFF6122

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
22,800	+				+0.4
22,800	+				+0.2
22,951	+				+0.0
22,951	+				-0.4
22,951	+				-0.5
22,951	+				+0.6
22,952	-				+1.7
22,955	+				+0.4
22,955	+				-0.6
22,955	+				-2.1
22,955	+				-0.2
22,955	+				-0.5
22,955	+				-0.1
22,955	+				-0.1
22,955	+				+0.2
22,955	+				-1.4
22,955	+				-0.7
22,956	-				+0.1
22,956	-				+0.9
22,956	-				+1.0
22,956	-				-0.9
22,956	-				-0.2
22,973	+				-0.9
22,973	+				+0.8
22,973	+				-0.4
22,974	-				+0.4
22,974	-				-0.4
22,974	-				-0.6
23,139	+		GFF6121	0.29	-0.4
23,159	+		GFF6121	0.32	-0.6
23,159	+		GFF6121	0.32	-0.0
23,601	+				+0.2
23,601	-				-1.6
23,602	-				-0.4
23,602	-				+0.1
23,602	-				+1.9
23,602	-				-0.3
23,602	-				+0.2
23,717	+				+0.2
23,717	+				+0.2
23,718	-				-0.8
24,074	-		GFF6122	0.38	+0.2
24,074	-		GFF6122	0.38	-0.1
24,502	+		GFF6122	0.72	-1.3
24,652	+		GFF6122	0.83	-2.1
24,652	+		GFF6122	0.83	-2.1
24,652	+		GFF6122	0.83	-0.1
24,652	+		GFF6122	0.83	-0.3
25,308	+		GFF6123	0.60	-0.0
25,309	-		GFF6123	0.61	-0.1
25,309	-		GFF6123	0.61	-0.4