Strain Fitness in Variovorax sp. SCN45 around GFF6111

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
9,177	+		GFF6110	0.41	+0.9
9,177	+		GFF6110	0.41	-1.4
9,177	+		GFF6110	0.41	-0.6
9,177	+		GFF6110	0.41	-0.7
9,178	-		GFF6110	0.42	-0.6
9,178	-		GFF6110	0.42	-1.7
9,178	-		GFF6110	0.42	+1.4
9,178	-		GFF6110	0.42	+0.4
9,178	-		GFF6110	0.42	-1.4
9,184	-		GFF6110	0.42	-0.5
9,381	+		GFF6110	0.55	-0.4
9,382	-		GFF6110	0.55	-0.5
9,382	-		GFF6110	0.55	+0.9
9,382	-		GFF6110	0.55	-0.3
9,382	-		GFF6110	0.55	+0.4
9,382	-		GFF6110	0.55	-0.5
9,457	-		GFF6110	0.61	+1.1
9,832	+		GFF6110	0.86	-1.1
9,832	+		GFF6110	0.86	-0.2
9,832	+		GFF6110	0.86	-1.4
9,833	-		GFF6110	0.86	-0.4
9,833	-		GFF6110	0.86	-0.1
9,945	-				-0.9
9,945	-				-0.1
10,011	+				-0.8
10,012	-				+0.1
10,080	-				+0.9
10,080	-				-0.5
10,394	-		GFF6111	0.23	-0.3
10,394	-		GFF6111	0.23	+0.7
10,456	+		GFF6111	0.29	-1.6
10,456	+		GFF6111	0.29	-0.9
10,457	-		GFF6111	0.29	-0.2
10,457	-		GFF6111	0.29	-0.8
10,520	-		GFF6111	0.35	-0.0
10,846	+		GFF6111	0.68	-1.5
10,969	-		GFF6111	0.80	-0.3
11,110	+				-0.2
11,111	-				+0.3
11,111	-				-0.3
11,111	-				-1.0
11,346	-		GFF6112	0.18	+0.8
11,409	+		GFF6112	0.24	-0.1
11,409	+		GFF6112	0.24	-0.8
11,410	-		GFF6112	0.24	+0.1
11,472	+		GFF6112	0.30	-1.8
11,472	+		GFF6112	0.30	-0.3
11,472	+		GFF6112	0.30	-0.4
11,472	+		GFF6112	0.30	-0.3
11,472	+		GFF6112	0.30	+0.1
11,472	+		GFF6112	0.30	+1.3
11,472	+		GFF6112	0.30	-1.4
11,473	-		GFF6112	0.30	-0.6
11,473	-		GFF6112	0.30	-0.7
11,473	-		GFF6112	0.30	-1.1
11,473	-		GFF6112	0.30	+0.6
11,706	+		GFF6112	0.53	-1.6
11,807	+		GFF6112	0.62	-0.0
11,807	+		GFF6112	0.62	-0.7
12,073	-		GFF6112	0.88	-0.5