Strain Fitness in Variovorax sp. SCN45 around GFF5950

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
6,329	+		GFF5948	0.29	+1.5
6,344	+		GFF5948	0.31	-1.5
6,345	-		GFF5948	0.31	-0.3
6,359	+		GFF5948	0.33	-1.5
6,452	+		GFF5948	0.48	+0.5
6,452	+		GFF5948	0.48	-0.2
6,452	+		GFF5948	0.48	-1.0
6,453	-		GFF5948	0.48	+0.2
6,453	-		GFF5948	0.48	-0.1
6,453	-		GFF5948	0.48	+0.1
6,453	-		GFF5948	0.48	-0.5
6,453	-		GFF5948	0.48	+0.1
6,455	-		GFF5948	0.48	-0.8
6,455	-		GFF5948	0.48	+4.1
6,500	+		GFF5948	0.55	-0.0
6,501	-		GFF5948	0.55	-0.1
6,501	-		GFF5948	0.55	-0.3
6,531	-		GFF5948	0.60	-1.2
6,716	+		GFF5948	0.88	-0.5
6,717	-		GFF5948	0.89	-0.5
6,717	-		GFF5948	0.89	-1.8
7,358	-		GFF5950	0.26	-1.5
7,456	+		GFF5950	0.42	+0.5
7,456	+		GFF5950	0.42	-0.5
7,456	+		GFF5950	0.42	+0.4
7,456	+		GFF5950	0.42	+0.4
7,457	-		GFF5950	0.43	-1.8
7,457	-		GFF5950	0.43	-0.0
7,457	-		GFF5950	0.43	+0.5
7,528	+		GFF5950	0.55	+1.5
7,528	+		GFF5950	0.55	-0.2
7,529	-		GFF5950	0.55	-0.5
7,529	-		GFF5950	0.55	+0.7
7,612	+		GFF5950	0.69	+0.1
7,612	+		GFF5950	0.69	-0.3
7,613	-		GFF5950	0.69	+0.4
7,718	-		GFF5950	0.87	+1.7
7,718	-		GFF5950	0.87	+0.2
7,730	-		GFF5950	0.89	-0.7
7,735	+		GFF5950	0.89	-0.7
7,735	+		GFF5950	0.89	-0.9
7,736	-		GFF5950	0.90	+0.7
7,736	-		GFF5950	0.90	+0.3
7,736	-		GFF5950	0.90	+1.0
7,736	-		GFF5950	0.90	+0.2
7,741	+				-0.6
7,741	+				+1.2
7,741	+				-0.6
7,742	-				-0.2
7,762	+				-0.7
7,762	+				-0.3
7,763	-				-0.2
7,976	+		GFF5951	0.40	-0.3
7,976	+		GFF5951	0.40	-0.4
7,985	+		GFF5951	0.42	-0.0
7,986	-		GFF5951	0.43	-1.5
7,986	-		GFF5951	0.43	+0.8
8,066	+		GFF5951	0.61	+0.9
8,066	+		GFF5951	0.61	-0.2
8,067	-		GFF5951	0.61	+0.7
8,067	-		GFF5951	0.61	-0.2
8,115	-		GFF5951	0.72	+0.1
8,144	+		GFF5951	0.79	-0.6
8,144	+		GFF5951	0.79	+0.1
8,144	+		GFF5951	0.79	-0.5
8,144	+		GFF5951	0.79	+1.4
8,145	-		GFF5951	0.79	-0.5
8,157	-		GFF5951	0.82	-0.4
8,157	-		GFF5951	0.82	-0.5
8,184	-		GFF5951	0.88	-1.3
8,184	-		GFF5951	0.88	-1.3
8,184	-		GFF5951	0.88	+0.3
8,184	-		GFF5951	0.88	-1.3
8,184	-		GFF5951	0.88	+0.7
8,184	-		GFF5951	0.88	-0.4
8,372	+		GFF5952	0.20	+0.4