Strain Fitness in Variovorax sp. SCN45 around GFF5865

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
67,400	+		GFF5863	0.89	-0.9
67,400	+		GFF5863	0.89	+0.0
67,400	+		GFF5863	0.89	-0.5
67,400	+		GFF5863	0.89	+0.7
67,400	+		GFF5863	0.89	-0.3
67,400	+		GFF5863	0.89	-0.3
67,400	+		GFF5863	0.89	-1.0
67,400	+		GFF5863	0.89	+0.1
67,401	-		GFF5863	0.89	-0.6
67,401	-		GFF5863	0.89	+0.0
67,401	-		GFF5863	0.89	-0.2
67,401	-		GFF5863	0.89	-0.0
67,401	-		GFF5863	0.89	-0.3
67,401	-		GFF5863	0.89	-0.3
67,401	-		GFF5863	0.89	-0.2
67,401	-		GFF5863	0.89	+0.3
67,401	-		GFF5863	0.89	-0.0
67,401	-		GFF5863	0.89	+0.1
67,401	-		GFF5863	0.89	-0.5
67,401	-		GFF5863	0.89	+0.3
67,401	-		GFF5863	0.89	+1.5
67,401	-		GFF5863	0.89	-0.2
67,401	-		GFF5863	0.89	-1.8
67,402	+		GFF5863	0.89	+0.3
67,402	+		GFF5863	0.89	+0.9
67,402	+		GFF5863	0.89	+0.3
67,402	+		GFF5863	0.89	-0.1
67,402	+		GFF5863	0.89	-0.3
67,403	-		GFF5863	0.89	-0.0
67,403	-		GFF5863	0.89	-0.7
67,442	+				-0.9
67,442	+				-0.8
67,442	+				+0.0
67,442	+				+0.9
67,442	+				+0.2
67,442	+				-0.8
67,442	+				+1.2
67,442	+				+1.7
67,443	-				-0.9
67,443	-				-1.7
67,443	-				-1.1
67,443	-				+0.6
67,443	-				+0.1
67,443	-				-0.3
67,443	-				+0.7
67,443	-				+0.2
67,457	+				+1.3
67,458	-				+0.9
67,493	+				+0.7
67,493	+				+0.1
67,493	+				-0.5
67,493	+				-0.3
67,493	+				-0.9
67,493	+				-0.6
67,494	-				+0.3
67,494	-				+0.9
67,494	-				-0.7
67,494	-				-1.3
67,494	-				-0.3
67,494	-				-0.3
67,494	-				-0.1
67,494	-				-0.5
67,494	-				+0.1
67,502	+				+1.4
67,502	+				-0.3
67,502	+				-0.1
67,503	-				-0.7
67,503	-				-0.4
67,503	-				-0.0
67,503	-				-0.5
67,503	-				+0.2
67,503	-				+2.1
67,503	-				-1.6
67,503	-				-0.0
67,503	-				-1.0
67,520	+				+0.3
67,520	+				+0.3
67,520	+				+0.7
67,520	+				-0.7
67,520	+				-0.3
67,520	+				+0.0
67,520	+				-0.3
67,520	+				-0.9
67,520	+				-2.4
67,520	+				-0.4
67,520	+				+1.4
67,520	+				-0.7
67,520	+				-0.3
67,520	+				+1.2
67,520	+				-1.2
67,520	+				+1.1
67,520	+				+1.1
67,520	+				+0.6
67,520	+				-0.7
67,521	-				+0.1
67,521	-				-2.5
67,521	-				+0.1
67,521	-				+0.8
67,521	-				-1.4
67,521	-				+0.3
67,521	-				-0.4
67,521	-				+0.2
67,521	-				-0.2
67,521	-				+0.3
67,521	-				-0.3
67,577	+				-1.2
67,577	+				-1.6
67,577	+				+0.3
67,577	+				+1.8
67,578	-				-1.0
67,578	-				+0.5
67,578	-				-0.7
67,578	-				-1.3
67,578	-				+1.1
67,580	+				+1.7
67,580	+				+0.7
67,580	+				+0.1
67,580	+				-1.0
67,580	+				-0.0
67,580	+				-0.3
67,581	-				+0.8
67,595	+				+0.3
67,595	+				+1.6
67,595	+				-1.2
67,595	+				+0.9
67,595	+				+0.5
67,595	+				-0.8
67,595	+				-0.3
67,596	-				+1.1
67,596	-				-0.4
67,596	-				-1.0
67,596	-				-2.1
67,596	-				+0.8
67,596	-				+0.2
67,596	-				-0.0
67,596	-				-0.8
67,596	-				-0.6
67,596	-				+0.4
67,607	+				-0.7
67,608	-				-0.1
67,739	+				-1.1
67,739	+				+0.2
67,739	+				+1.0
67,740	-				+2.5
67,740	-				+0.3
67,740	-				-0.9
67,740	-				+0.7
67,740	-				-1.9
68,019	+		GFF5864	0.40	+0.3
68,019	+		GFF5864	0.40	+1.2
68,019	+		GFF5864	0.40	-0.4
68,020	-		GFF5864	0.40	+0.2
68,020	-		GFF5864	0.40	-0.1
68,020	-		GFF5864	0.40	-0.4
68,020	-		GFF5864	0.40	-0.6
68,078	+		GFF5864	0.49	-1.3
68,079	-		GFF5864	0.50	-1.5
68,079	-		GFF5864	0.50	-0.2
68,660	+		GFF5865	0.33	-0.3
68,712	+		GFF5865	0.39	+0.1
68,712	+		GFF5865	0.39	+0.2
68,712	+		GFF5865	0.39	+1.0
68,712	+		GFF5865	0.39	+1.3
68,713	-		GFF5865	0.39	+0.4
68,713	-		GFF5865	0.39	-0.2
68,713	-		GFF5865	0.39	+0.4
68,713	-		GFF5865	0.39	-0.6
68,771	+		GFF5865	0.47	+0.2
68,771	+		GFF5865	0.47	-0.9
68,771	+		GFF5865	0.47	+1.2
68,771	+		GFF5865	0.47	+0.2
68,772	-		GFF5865	0.47	+0.2
69,068	+		GFF5865	0.84	+0.4
69,068	+		GFF5865	0.84	+0.5
69,068	+		GFF5865	0.84	+0.5
69,069	-		GFF5865	0.84	+0.2
69,069	-		GFF5865	0.84	-0.0
69,069	-		GFF5865	0.84	+0.6
69,069	-		GFF5865	0.84	+0.3
69,131	+				-0.6
69,132	-				+0.1
69,132	-				+1.4
69,226	+				-0.3
69,331	+		GFF5866	0.13	-0.2
69,391	+		GFF5866	0.22	+0.1
69,391	+		GFF5866	0.22	-0.1
69,391	+		GFF5866	0.22	+0.2
69,391	+		GFF5866	0.22	+1.1
69,392	-		GFF5866	0.22	+0.1
69,392	-		GFF5866	0.22	-0.6
69,392	-		GFF5866	0.22	+0.2
69,392	-		GFF5866	0.22	+0.1
69,392	-		GFF5866	0.22	-0.3
69,392	-		GFF5866	0.22	-0.2
69,392	-		GFF5866	0.22	+0.9
69,649	+		GFF5866	0.58	+0.6
70,029	+		GFF5867	0.25	-0.3
70,030	-		GFF5867	0.25	-0.6
70,074	+		GFF5867	0.40	+0.4
70,074	+		GFF5867	0.40	-0.0
70,074	+		GFF5867	0.40	-0.0
70,074	+		GFF5867	0.40	+0.3
70,074	+		GFF5867	0.40	+2.3
70,074	+		GFF5867	0.40	+0.2
70,074	+		GFF5867	0.40	+0.2
70,074	+		GFF5867	0.40	+0.2
70,074	+		GFF5867	0.40	+0.3
70,074	+		GFF5867	0.40	+0.1
70,074	+		GFF5867	0.40	-0.9
70,074	+		GFF5867	0.40	+0.8
70,074	+		GFF5867	0.40	+0.9
70,074	+		GFF5867	0.40	-0.4
70,075	-		GFF5867	0.40	-0.5
70,075	-		GFF5867	0.40	-0.3
70,075	-		GFF5867	0.40	+1.1
70,075	-		GFF5867	0.40	-0.6
70,075	-		GFF5867	0.40	+0.1
70,075	-		GFF5867	0.40	+0.3
70,075	-		GFF5867	0.40	-0.9
70,149	+		GFF5867	0.65	+0.1
70,149	+		GFF5867	0.65	-0.8
70,150	-		GFF5867	0.65	+1.3
70,150	-		GFF5867	0.65	+0.3
70,150	-		GFF5867	0.65	+0.1
70,150	-		GFF5867	0.65	+0.4