Strain Fitness in Variovorax sp. SCN45 around GFF5792

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5790 and GFF5791 overlap by 4 nucleotidesGFF5791 and GFF5792 are separated by 97 nucleotidesGFF5792 and GFF5793 are separated by 10 nucleotides GFF5790 - putative membrane protein, at 164,954 to 165,934 GFF5790 GFF5791 - FIG00031715: Predicted metal-dependent phosphoesterases (PHP family), at 165,931 to 166,788 GFF5791 GFF5792 - Mg2+ and Co2+ transporters, at 166,886 to 167,929 GFF5792 GFF5793 - Low-affinity inorganic phosphate transporter, at 167,940 to 169,577 GFF5793 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 166.086 kb on - strand, within GFF5791at 166.086 kb on - strand, within GFF5791at 166.094 kb on + strand, within GFF5791at 166.094 kb on + strand, within GFF5791at 166.094 kb on + strand, within GFF5791at 166.095 kb on - strand, within GFF5791at 166.095 kb on - strand, within GFF5791at 166.172 kb on + strand, within GFF5791at 166.173 kb on - strand, within GFF5791at 166.196 kb on + strand, within GFF5791at 166.196 kb on + strand, within GFF5791at 166.196 kb on + strand, within GFF5791at 166.197 kb on - strand, within GFF5791at 166.287 kb on - strand, within GFF5791at 166.424 kb on + strand, within GFF5791at 166.424 kb on + strand, within GFF5791at 166.425 kb on - strand, within GFF5791at 166.425 kb on - strand, within GFF5791at 166.425 kb on - strand, within GFF5791at 166.425 kb on - strand, within GFF5791at 166.425 kb on - strand, within GFF5791at 166.502 kb on + strand, within GFF5791at 166.502 kb on + strand, within GFF5791at 166.503 kb on - strand, within GFF5791at 166.503 kb on - strand, within GFF5791at 166.604 kb on + strand, within GFF5791at 166.604 kb on + strand, within GFF5791at 166.605 kb on - strand, within GFF5791at 166.605 kb on - strand, within GFF5791at 166.605 kb on - strand, within GFF5791at 166.800 kb on - strandat 166.807 kb on - strandat 166.836 kb on + strandat 166.837 kb on - strandat 166.865 kb on + strandat 166.940 kb on + strandat 166.941 kb on - strandat 167.102 kb on + strand, within GFF5792at 167.670 kb on + strand, within GFF5792at 167.671 kb on - strand, within GFF5792at 167.751 kb on + strand, within GFF5792at 167.751 kb on + strand, within GFF5792at 167.862 kb on + strandat 167.895 kb on + strandat 167.895 kb on + strandat 167.896 kb on - strandat 167.965 kb on + strandat 167.965 kb on + strandat 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.121 kb on + strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.122 kb on - strand, within GFF5793at 168.182 kb on - strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.412 kb on + strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.413 kb on - strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.549 kb on + strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.550 kb on - strand, within GFF5793at 168.553 kb on + strand, within GFF5793at 168.554 kb on - strand, within GFF5793at 168.853 kb on + strand, within GFF5793at 168.853 kb on + strand, within GFF5793at 168.854 kb on - strand, within GFF5793at 168.854 kb on - strand, within GFF5793

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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166,086 - GFF5791 0.18 -0.8
166,086 - GFF5791 0.18 -0.3
166,094 + GFF5791 0.19 -1.2
166,094 + GFF5791 0.19 -0.0
166,094 + GFF5791 0.19 -0.9
166,095 - GFF5791 0.19 -0.9
166,095 - GFF5791 0.19 -2.1
166,172 + GFF5791 0.28 +1.1
166,173 - GFF5791 0.28 -0.6
166,196 + GFF5791 0.31 -0.2
166,196 + GFF5791 0.31 +0.4
166,196 + GFF5791 0.31 +0.3
166,197 - GFF5791 0.31 -0.2
166,287 - GFF5791 0.41 +1.9
166,424 + GFF5791 0.57 +0.1
166,424 + GFF5791 0.57 +0.4
166,425 - GFF5791 0.58 +0.0
166,425 - GFF5791 0.58 -0.4
166,425 - GFF5791 0.58 +0.6
166,425 - GFF5791 0.58 -1.5
166,425 - GFF5791 0.58 -2.4
166,502 + GFF5791 0.67 -0.2
166,502 + GFF5791 0.67 +1.3
166,503 - GFF5791 0.67 -0.9
166,503 - GFF5791 0.67 +0.6
166,604 + GFF5791 0.78 -0.8
166,604 + GFF5791 0.78 +0.0
166,605 - GFF5791 0.79 -0.3
166,605 - GFF5791 0.79 -0.8
166,605 - GFF5791 0.79 +0.0
166,800 - -0.3
166,807 - -1.0
166,836 + +0.1
166,837 - -2.0
166,865 + -0.5
166,940 + +0.5
166,941 - +0.0
167,102 + GFF5792 0.21 -0.7
167,670 + GFF5792 0.75 -0.9
167,671 - GFF5792 0.75 -0.1
167,751 + GFF5792 0.83 -0.4
167,751 + GFF5792 0.83 -1.9
167,862 + -0.3
167,895 + -0.1
167,895 + -1.0
167,896 - +0.2
167,965 + +0.2
167,965 + -0.1
168,121 + GFF5793 0.11 -1.2
168,121 + GFF5793 0.11 -1.4
168,121 + GFF5793 0.11 +0.3
168,121 + GFF5793 0.11 +0.2
168,121 + GFF5793 0.11 +1.2
168,121 + GFF5793 0.11 +0.3
168,122 - GFF5793 0.11 +0.2
168,122 - GFF5793 0.11 -0.5
168,122 - GFF5793 0.11 +0.5
168,122 - GFF5793 0.11 -0.3
168,122 - GFF5793 0.11 +1.1
168,122 - GFF5793 0.11 -0.4
168,122 - GFF5793 0.11 -0.1
168,182 - GFF5793 0.15 -0.5
168,412 + GFF5793 0.29 -0.1
168,412 + GFF5793 0.29 +0.6
168,412 + GFF5793 0.29 -0.3
168,412 + GFF5793 0.29 +0.5
168,412 + GFF5793 0.29 -0.2
168,412 + GFF5793 0.29 -0.9
168,412 + GFF5793 0.29 +1.1
168,413 - GFF5793 0.29 -0.4
168,413 - GFF5793 0.29 -1.2
168,413 - GFF5793 0.29 -0.4
168,413 - GFF5793 0.29 -0.3
168,413 - GFF5793 0.29 -0.1
168,413 - GFF5793 0.29 -0.3
168,413 - GFF5793 0.29 +1.6
168,413 - GFF5793 0.29 +0.6
168,413 - GFF5793 0.29 -0.6
168,413 - GFF5793 0.29 -1.4
168,413 - GFF5793 0.29 -0.7
168,413 - GFF5793 0.29 -0.2
168,413 - GFF5793 0.29 +1.6
168,413 - GFF5793 0.29 -0.5
168,549 + GFF5793 0.37 -0.2
168,549 + GFF5793 0.37 -0.4
168,549 + GFF5793 0.37 +1.4
168,549 + GFF5793 0.37 +0.5
168,549 + GFF5793 0.37 +0.1
168,550 - GFF5793 0.37 -0.2
168,550 - GFF5793 0.37 -1.0
168,550 - GFF5793 0.37 -2.2
168,550 - GFF5793 0.37 +0.6
168,553 + GFF5793 0.37 -0.1
168,554 - GFF5793 0.37 -0.4
168,853 + GFF5793 0.56 -0.6
168,853 + GFF5793 0.56 +0.2
168,854 - GFF5793 0.56 -0.4
168,854 - GFF5793 0.56 -0.1

Or see this region's nucleotide sequence