Strain Fitness in Variovorax sp. SCN45 around GFF5779

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
152,770	-				+0.1
152,770	-				+1.1
152,805	+				+0.3
152,805	+				-0.9
152,806	-				+1.1
152,806	-				-0.8
152,806	-				-0.2
152,806	-				+0.4
152,955	+		GFF5778	0.24	-0.3
152,956	-		GFF5778	0.24	+0.0
152,956	-		GFF5778	0.24	-0.4
153,785	+				+1.1
153,785	+				-0.2
153,785	+				+0.1
153,786	-				-0.8
153,786	-				+0.6
153,786	-				+1.6
153,786	-				-0.1
153,832	+		GFF5779	0.13	+0.7
153,832	+		GFF5779	0.13	-0.9
153,833	-		GFF5779	0.13	+2.6
153,833	-		GFF5779	0.13	+1.6
154,039	+		GFF5779	0.32	-1.3
154,039	+		GFF5779	0.32	+0.3
154,039	+		GFF5779	0.32	-0.1
154,040	-		GFF5779	0.32	-0.6
154,040	-		GFF5779	0.32	-0.9
154,393	+		GFF5779	0.66	+0.7
154,653	+				-1.2
154,654	-				-1.5
155,108	+		GFF5780	0.34	-0.6
155,486	+		GFF5780	0.71	+0.5
155,639	+		GFF5780	0.86	+0.4
155,639	+		GFF5780	0.86	-0.5
155,639	+		GFF5780	0.86	-0.5
155,640	-		GFF5780	0.87	+0.2
155,640	-		GFF5780	0.87	-1.2
155,640	-		GFF5780	0.87	+0.2
155,640	-		GFF5780	0.87	-2.4
155,640	-		GFF5780	0.87	-1.4
155,640	-		GFF5780	0.87	+2.6
155,640	-		GFF5780	0.87	+0.0
155,640	-		GFF5780	0.87	-0.0