Strain Fitness in Variovorax sp. SCN45 around GFF5707

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
79,444	+				+0.1
79,444	+				-0.3
79,444	+				-0.9
79,444	+				+1.6
79,444	+				+0.1
79,445	-				+0.1
79,445	-				-0.5
79,445	-				+0.2
79,445	-				+0.0
79,482	-				+0.6
79,482	-				-1.1
79,539	+		GFF5705	0.14	-0.5
79,539	+		GFF5705	0.14	-0.2
79,539	+		GFF5705	0.14	-0.1
79,539	+		GFF5705	0.14	+1.2
79,539	+		GFF5705	0.14	-0.7
79,539	+		GFF5705	0.14	+0.4
79,539	+		GFF5705	0.14	-0.5
79,540	-		GFF5705	0.15	-0.6
79,540	-		GFF5705	0.15	-0.7
79,540	-		GFF5705	0.15	-0.6
79,540	-		GFF5705	0.15	-0.3
79,540	-		GFF5705	0.15	+0.8
79,540	-		GFF5705	0.15	-0.9
79,573	+		GFF5705	0.20	+0.5
79,573	+		GFF5705	0.20	+0.8
79,573	+		GFF5705	0.20	-0.2
79,574	-		GFF5705	0.20	-1.4
79,574	-		GFF5705	0.20	+0.1
79,601	-		GFF5705	0.25	-0.6
79,621	+		GFF5705	0.29	+0.4
79,621	+		GFF5705	0.29	+1.1
79,621	+		GFF5705	0.29	-1.3
79,621	+		GFF5705	0.29	-0.1
79,621	+		GFF5705	0.29	+0.3
79,622	-		GFF5705	0.29	-0.8
79,622	-		GFF5705	0.29	-0.2
79,622	-		GFF5705	0.29	-0.6
79,622	-		GFF5705	0.29	-0.2
79,622	-		GFF5705	0.29	+1.2
79,622	-		GFF5705	0.29	-0.9
79,834	+		GFF5705	0.66	+0.0
79,835	-		GFF5705	0.66	+0.1
79,835	-		GFF5705	0.66	+0.2
79,835	-		GFF5705	0.66	+0.5
80,144	+		GFF5706	0.71	-0.1
80,144	+		GFF5706	0.71	-0.9
80,144	+		GFF5706	0.71	+0.8
80,144	-		GFF5706	0.71	+0.9
80,145	-		GFF5706	0.72	-0.4
80,145	-		GFF5706	0.72	-0.7
80,153	+		GFF5706	0.77	+0.1
80,269	-				-0.1
80,328	+				+1.6
80,328	+				-0.8
80,328	+				-0.5
80,329	-				-0.3
80,329	-				+0.4
80,329	-				-1.7
80,560	+		GFF5707	0.26	-0.7
80,826	+		GFF5707	0.57	+0.5
80,864	-		GFF5707	0.62	+1.1
81,034	+		GFF5707	0.82	-0.1
81,209	+				-0.9
81,209	+				-0.0
81,210	-				+0.5
81,225	+				+1.1
81,226	-				-1.4
81,348	-				+0.6
81,402	-				+0.8
81,402	-				-0.4
81,402	-				-0.7
81,402	-				-0.1
81,737	+		GFF5708	0.35	-0.6
81,737	+		GFF5708	0.35	-0.6
81,737	+		GFF5708	0.35	-0.5
81,737	+		GFF5708	0.35	+1.6
81,737	+		GFF5708	0.35	-0.5
81,737	+		GFF5708	0.35	-0.7
81,737	+		GFF5708	0.35	-0.9
81,737	+		GFF5708	0.35	-0.1
81,738	-		GFF5708	0.35	+0.6
81,738	-		GFF5708	0.35	+0.6
81,738	-		GFF5708	0.35	+0.2
81,738	-		GFF5708	0.35	-0.9
81,738	-		GFF5708	0.35	-0.4
81,738	-		GFF5708	0.35	-0.2
81,738	-		GFF5708	0.35	+2.4
81,738	-		GFF5708	0.35	-0.1
81,758	+		GFF5708	0.36	-0.4
81,965	+		GFF5708	0.52	+0.5
81,966	-		GFF5708	0.52	+0.8
81,966	-		GFF5708	0.52	-0.4