Strain Fitness in Variovorax sp. SCN45 around GFF5594

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5592 and GFF5593 overlap by 4 nucleotidesGFF5593 and GFF5594 overlap by 4 nucleotidesGFF5594 and GFF5595 are separated by 31 nucleotides GFF5592 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 212,709 to 213,767 GFF5592 GFF5593 - no description, at 213,764 to 214,567 GFF5593 GFF5594 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 214,564 to 215,640 GFF5594 GFF5595 - no description, at 215,672 to 216,709 GFF5595 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.809 kb on + strandat 213.908 kb on + strand, within GFF5593at 213.908 kb on + strand, within GFF5593at 213.909 kb on - strand, within GFF5593at 214.016 kb on + strand, within GFF5593at 214.017 kb on - strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.115 kb on + strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.116 kb on - strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.448 kb on + strand, within GFF5593at 214.449 kb on - strand, within GFF5593at 214.449 kb on - strand, within GFF5593at 214.449 kb on - strand, within GFF5593at 214.570 kb on + strandat 214.570 kb on + strandat 214.570 kb on + strandat 214.570 kb on + strandat 214.571 kb on - strandat 214.571 kb on - strandat 214.571 kb on - strandat 214.571 kb on - strandat 214.571 kb on - strandat 214.571 kb on - strandat 214.600 kb on + strandat 214.601 kb on - strandat 214.601 kb on - strandat 214.814 kb on - strand, within GFF5594at 214.814 kb on - strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.227 kb on + strand, within GFF5594at 215.228 kb on - strand, within GFF5594at 215.228 kb on - strand, within GFF5594at 215.260 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.461 kb on + strand, within GFF5594at 215.462 kb on - strand, within GFF5594at 215.462 kb on - strand, within GFF5594at 215.462 kb on - strand, within GFF5594at 215.795 kb on + strand, within GFF5595at 216.071 kb on + strand, within GFF5595at 216.072 kb on - strand, within GFF5595at 216.072 kb on - strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.191 kb on + strand, within GFF5595at 216.191 kb on + strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.371 kb on + strand, within GFF5595at 216.492 kb on - strand, within GFF5595at 216.492 kb on - strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.549 kb on - strand, within GFF5595at 216.549 kb on - strand, within GFF5595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
213,809 + -0.2
213,908 + GFF5593 0.18 -0.8
213,908 + GFF5593 0.18 +0.6
213,909 - GFF5593 0.18 -0.0
214,016 + GFF5593 0.31 +0.7
214,017 - GFF5593 0.31 +0.6
214,115 + GFF5593 0.44 -1.0
214,115 + GFF5593 0.44 +0.5
214,115 + GFF5593 0.44 +1.0
214,115 + GFF5593 0.44 -0.4
214,115 + GFF5593 0.44 +1.1
214,115 + GFF5593 0.44 -1.2
214,115 + GFF5593 0.44 +0.0
214,116 - GFF5593 0.44 +0.5
214,116 - GFF5593 0.44 +0.1
214,116 - GFF5593 0.44 -0.1
214,116 - GFF5593 0.44 -1.1
214,116 - GFF5593 0.44 +0.7
214,116 - GFF5593 0.44 -1.6
214,116 - GFF5593 0.44 -0.2
214,116 - GFF5593 0.44 -0.4
214,116 - GFF5593 0.44 -1.0
214,116 - GFF5593 0.44 +0.8
214,448 + GFF5593 0.85 +0.3
214,448 + GFF5593 0.85 -0.1
214,448 + GFF5593 0.85 -0.5
214,448 + GFF5593 0.85 +0.7
214,448 + GFF5593 0.85 -1.2
214,448 + GFF5593 0.85 +0.3
214,448 + GFF5593 0.85 -0.0
214,449 - GFF5593 0.85 +1.1
214,449 - GFF5593 0.85 +0.4
214,449 - GFF5593 0.85 -0.3
214,570 + -0.5
214,570 + -1.2
214,570 + -0.3
214,570 + -2.0
214,571 - +0.3
214,571 - +0.4
214,571 - +0.2
214,571 - +0.4
214,571 - +0.5
214,571 - +2.5
214,600 + -0.2
214,601 - -0.2
214,601 - -2.0
214,814 - GFF5594 0.23 +0.2
214,814 - GFF5594 0.23 -0.2
215,227 + GFF5594 0.62 -0.0
215,227 + GFF5594 0.62 -0.0
215,227 + GFF5594 0.62 -0.3
215,227 + GFF5594 0.62 +0.8
215,227 + GFF5594 0.62 -0.7
215,227 + GFF5594 0.62 +0.6
215,228 - GFF5594 0.62 -1.0
215,228 - GFF5594 0.62 +0.9
215,260 + GFF5594 0.65 -0.5
215,461 + GFF5594 0.83 -0.5
215,461 + GFF5594 0.83 -0.9
215,461 + GFF5594 0.83 -0.4
215,461 + GFF5594 0.83 -0.1
215,462 - GFF5594 0.83 -0.6
215,462 - GFF5594 0.83 +0.6
215,462 - GFF5594 0.83 -2.0
215,795 + GFF5595 0.12 +0.1
216,071 + GFF5595 0.38 -1.2
216,072 - GFF5595 0.39 +0.4
216,072 - GFF5595 0.39 -0.0
216,092 + GFF5595 0.40 +0.6
216,092 + GFF5595 0.40 +0.2
216,092 + GFF5595 0.40 +0.1
216,092 + GFF5595 0.40 +0.2
216,092 + GFF5595 0.40 +0.4
216,093 - GFF5595 0.41 -0.8
216,093 - GFF5595 0.41 -1.3
216,093 - GFF5595 0.41 +1.1
216,152 + GFF5595 0.46 -1.0
216,152 + GFF5595 0.46 -0.2
216,152 + GFF5595 0.46 -0.2
216,153 - GFF5595 0.46 +0.3
216,153 - GFF5595 0.46 -1.2
216,153 - GFF5595 0.46 -0.6
216,191 + GFF5595 0.50 -1.0
216,191 + GFF5595 0.50 -0.4
216,192 - GFF5595 0.50 -1.2
216,192 - GFF5595 0.50 -0.8
216,192 - GFF5595 0.50 -0.2
216,371 + GFF5595 0.67 +0.4
216,492 - GFF5595 0.79 -0.0
216,492 - GFF5595 0.79 +0.4
216,548 + GFF5595 0.84 -0.0
216,548 + GFF5595 0.84 +0.3
216,548 + GFF5595 0.84 -1.2
216,549 - GFF5595 0.84 +1.0
216,549 - GFF5595 0.84 +1.0

Or see this region's nucleotide sequence