Strain Fitness in Variovorax sp. SCN45 around GFF5445

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5444 and GFF5445 overlap by 4 nucleotidesGFF5445 and GFF5446 are separated by 2 nucleotides GFF5444 - FIG005080: Possible exported protein, at 70,792 to 75,009 GFF5444 GFF5445 - FIG003879: Uncharacterized subgroup of the nitrilase superfamily, at 75,006 to 75,821 GFF5445 GFF5446 - Two-component system sensor histidine kinase/response regulator hybrid, at 75,824 to 77,878 GFF5446 Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1at 74.014 kb on + strand, within GFF5444at 74.014 kb on + strand, within GFF5444at 74.898 kb on - strandat 75.126 kb on + strand, within GFF5445at 75.126 kb on + strand, within GFF5445at 75.126 kb on + strand, within GFF5445at 75.126 kb on + strand, within GFF5445at 75.127 kb on - strand, within GFF5445at 75.127 kb on - strand, within GFF5445at 75.336 kb on + strand, within GFF5445at 75.381 kb on + strand, within GFF5445at 75.382 kb on - strand, within GFF5445at 75.382 kb on - strand, within GFF5445at 75.480 kb on + strand, within GFF5445at 75.480 kb on + strand, within GFF5445at 75.480 kb on + strand, within GFF5445at 75.480 kb on + strand, within GFF5445at 75.480 kb on + strand, within GFF5445at 75.481 kb on - strand, within GFF5445at 75.481 kb on - strand, within GFF5445at 75.481 kb on - strand, within GFF5445at 75.481 kb on - strand, within GFF5445at 75.481 kb on - strand, within GFF5445at 75.504 kb on + strand, within GFF5445at 75.566 kb on + strand, within GFF5445at 75.567 kb on - strand, within GFF5445at 75.819 kb on + strandat 75.820 kb on - strandat 75.820 kb on - strandat 75.820 kb on - strandat 75.820 kb on - strandat 76.307 kb on + strand, within GFF5446at 76.307 kb on + strand, within GFF5446at 76.308 kb on - strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.322 kb on + strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.323 kb on - strand, within GFF5446at 76.391 kb on + strand, within GFF5446at 76.406 kb on + strand, within GFF5446at 76.406 kb on + strand, within GFF5446at 76.406 kb on + strand, within GFF5446at 76.406 kb on + strand, within GFF5446at 76.407 kb on - strand, within GFF5446at 76.407 kb on - strand, within GFF5446at 76.407 kb on - strand, within GFF5446at 76.814 kb on + strand, within GFF5446at 76.814 kb on + strand, within GFF5446at 76.814 kb on + strand, within GFF5446at 76.814 kb on + strand, within GFF5446at 76.814 kb on + strand, within GFF5446at 76.814 kb on + strand, within GFF5446at 76.815 kb on - strand, within GFF5446at 76.815 kb on - strand, within GFF5446at 76.815 kb on - strand, within GFF5446at 76.815 kb on - strand, within GFF5446at 76.815 kb on - strand, within GFF5446at 76.815 kb on - strand, within GFF5446at 76.815 kb on - strand, within GFF5446

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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74,014 + GFF5444 0.76 +0.1
74,014 + GFF5444 0.76 -0.4
74,898 - -1.2
75,126 + GFF5445 0.15 -2.3
75,126 + GFF5445 0.15 +1.2
75,126 + GFF5445 0.15 -0.7
75,126 + GFF5445 0.15 -0.8
75,127 - GFF5445 0.15 -0.2
75,127 - GFF5445 0.15 +0.5
75,336 + GFF5445 0.40 +0.8
75,381 + GFF5445 0.46 -1.1
75,382 - GFF5445 0.46 -0.5
75,382 - GFF5445 0.46 -1.6
75,480 + GFF5445 0.58 -1.0
75,480 + GFF5445 0.58 -0.8
75,480 + GFF5445 0.58 -0.3
75,480 + GFF5445 0.58 -0.5
75,480 + GFF5445 0.58 -0.0
75,481 - GFF5445 0.58 +0.7
75,481 - GFF5445 0.58 -1.3
75,481 - GFF5445 0.58 +1.2
75,481 - GFF5445 0.58 -2.0
75,481 - GFF5445 0.58 -1.2
75,504 + GFF5445 0.61 -0.3
75,566 + GFF5445 0.69 -1.6
75,567 - GFF5445 0.69 -0.6
75,819 + -0.0
75,820 - +0.4
75,820 - -0.2
75,820 - +0.7
75,820 - -0.3
76,307 + GFF5446 0.24 +1.0
76,307 + GFF5446 0.24 -0.2
76,308 - GFF5446 0.24 -0.6
76,322 + GFF5446 0.24 -0.4
76,322 + GFF5446 0.24 +0.7
76,322 + GFF5446 0.24 +0.5
76,322 + GFF5446 0.24 +0.9
76,322 + GFF5446 0.24 -1.2
76,322 + GFF5446 0.24 -0.8
76,322 + GFF5446 0.24 +1.5
76,322 + GFF5446 0.24 -1.1
76,322 + GFF5446 0.24 +0.6
76,323 - GFF5446 0.24 +0.2
76,323 - GFF5446 0.24 +0.3
76,323 - GFF5446 0.24 -0.4
76,323 - GFF5446 0.24 -0.9
76,323 - GFF5446 0.24 +1.1
76,323 - GFF5446 0.24 -1.9
76,323 - GFF5446 0.24 -1.3
76,323 - GFF5446 0.24 +0.0
76,323 - GFF5446 0.24 -1.3
76,323 - GFF5446 0.24 +0.8
76,323 - GFF5446 0.24 -0.7
76,323 - GFF5446 0.24 +0.2
76,323 - GFF5446 0.24 -1.0
76,323 - GFF5446 0.24 +0.5
76,391 + GFF5446 0.28 -1.0
76,406 + GFF5446 0.28 -0.8
76,406 + GFF5446 0.28 -0.7
76,406 + GFF5446 0.28 +0.2
76,406 + GFF5446 0.28 +0.6
76,407 - GFF5446 0.28 -2.0
76,407 - GFF5446 0.28 -0.3
76,407 - GFF5446 0.28 +0.6
76,814 + GFF5446 0.48 -0.5
76,814 + GFF5446 0.48 +0.1
76,814 + GFF5446 0.48 -0.6
76,814 + GFF5446 0.48 -2.7
76,814 + GFF5446 0.48 -0.9
76,814 + GFF5446 0.48 +0.9
76,815 - GFF5446 0.48 +0.7
76,815 - GFF5446 0.48 +0.5
76,815 - GFF5446 0.48 +0.2
76,815 - GFF5446 0.48 -1.3
76,815 - GFF5446 0.48 +0.4
76,815 - GFF5446 0.48 -0.1
76,815 - GFF5446 0.48 -0.2

Or see this region's nucleotide sequence