Strain Fitness in Variovorax sp. SCN45 around GFF5424

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
48,634	+		GFF5422	0.16	-0.8
48,634	+		GFF5422	0.16	+0.9
48,634	+		GFF5422	0.16	+1.1
48,634	+		GFF5422	0.16	+0.1
48,634	+		GFF5422	0.16	-0.0
48,635	-		GFF5422	0.17	-0.1
48,635	-		GFF5422	0.17	-0.3
48,635	-		GFF5422	0.17	+0.2
48,635	-		GFF5422	0.17	+0.2
48,635	-		GFF5422	0.17	-0.5
48,635	-		GFF5422	0.17	+0.5
48,868	+		GFF5422	0.82	-0.8
48,869	-		GFF5422	0.83	-0.6
48,869	-		GFF5422	0.83	-0.2
48,869	-		GFF5422	0.83	+0.3
48,869	-		GFF5422	0.83	+1.0
48,869	-		GFF5422	0.83	-0.2
48,869	-		GFF5422	0.83	-0.9
48,869	-		GFF5422	0.83	+0.2
48,869	-		GFF5422	0.83	+0.0
48,869	-		GFF5422	0.83	+0.2
48,869	-		GFF5422	0.83	+1.8
48,874	+		GFF5422	0.84	-1.2
48,874	+		GFF5422	0.84	-0.7
48,874	+		GFF5422	0.84	-2.1
48,874	+		GFF5422	0.84	+0.8
48,874	+		GFF5422	0.84	+0.9
48,874	+		GFF5422	0.84	+0.8
48,874	+		GFF5422	0.84	+0.8
48,874	+		GFF5422	0.84	-0.7
48,874	+		GFF5422	0.84	+0.9
48,875	-		GFF5422	0.84	+0.4
48,875	-		GFF5422	0.84	-0.3
48,875	-		GFF5422	0.84	+0.3
48,875	-		GFF5422	0.84	+0.1
48,875	-		GFF5422	0.84	+1.2
49,025	+				-0.5
49,026	-				-0.2
49,246	+		GFF5423	0.48	-0.7
49,246	+		GFF5423	0.48	+0.7
49,246	+		GFF5423	0.48	+0.8
49,246	+		GFF5423	0.48	+0.6
49,246	+		GFF5423	0.48	+0.2
49,247	-		GFF5423	0.48	-0.6
49,451	+				-0.1
49,451	+				+1.4
49,451	+				-0.3
49,451	+				-0.6
49,451	+				-0.5
49,451	+				-0.9
49,451	+				+0.7
49,451	+				+0.6
49,451	+				-0.8
49,451	+				-1.3
49,451	+				-0.2
49,451	+				+0.8
49,451	+				-0.8
49,451	+				-0.5
49,451	+				+0.9
49,451	+				+0.7
49,451	+				+0.1
49,451	+				-0.4
49,452	-				-0.5
49,452	-				+0.1
49,452	-				+1.2
49,452	-				+2.1
49,452	-				+0.3
49,452	-				-0.5
49,452	-				+0.3
49,452	-				+0.5
49,452	-				+0.3
49,452	-				-0.3
49,452	-				+0.6
49,452	-				-0.5
49,452	-				-0.9
49,452	-				+1.5
49,452	-				+0.2
49,452	-				+0.1
49,452	-				+0.4
49,467	+				-0.2
49,467	+				+0.4
49,467	+				-1.3
49,467	+				+0.1
49,467	+				-0.0
49,469	+				-0.4
49,469	+				+0.2
49,469	+				+0.1
49,469	+				+0.4
49,469	+				+0.2
49,469	+				+1.0
49,470	-				+0.4
49,470	-				+0.1
49,470	-				-0.2
49,470	-				-0.3
49,470	-				+0.8
49,470	-				+0.4
49,470	-				+0.1
49,504	+				-0.1
49,504	+				-0.2
49,504	+				+0.5
49,504	+				-0.3
49,504	+				-0.2
49,504	+				-0.8
49,504	+				-0.4
49,505	-				-1.5
49,505	-				+1.3
49,505	-				+0.7
49,505	-				+1.1
49,505	-				+0.2
49,505	-				-0.0
49,508	+				-0.5
49,508	+				+0.0
49,508	+				-0.5
49,508	+				+0.1
49,508	+				-0.7
49,508	+				-0.6
49,508	+				-0.4
49,508	+				+0.2
49,508	+				-0.9
49,508	+				-1.0
49,508	+				+0.5
49,509	-				+0.6
49,509	-				-1.5
49,509	-				+0.2
49,509	-				+1.5
49,509	-				+0.3
49,509	-				-0.7
49,509	-				-0.3
49,509	-				+1.2
49,509	-				-1.1
49,509	-				-1.0
49,509	-				-0.9
49,509	-				+0.0
49,509	-				-0.4
49,551	-				+0.8
49,679	+		GFF5424	0.14	-1.2
49,679	+		GFF5424	0.14	+0.4
49,680	-		GFF5424	0.14	-0.2
50,277	+				+0.2
50,322	+				+1.8
50,322	+				+1.2
50,322	+				+0.2
50,322	+				-0.8
50,323	-				-1.0
50,323	-				+0.2
50,323	-				+0.1
50,323	-				-1.3
50,323	-				-0.4
50,323	-				-0.3
50,323	-				-1.2
50,323	-				+0.1
50,323	-				-1.2
50,323	-				-0.2
50,323	-				-0.5
50,323	-				+0.3
50,536	+				+0.7
50,536	+				+0.2
50,537	-				-0.1
50,537	-				+1.8
50,571	+				+0.4
50,572	-				+0.8
50,572	-				+0.1
50,572	-				+0.6
50,572	-				-0.6
50,572	-				+0.5
50,618	+				+0.2
50,618	+				+0.6
50,618	+				+0.2
50,618	+				+1.8
50,618	+				+0.5
50,618	+				-0.6
50,619	-				-1.5
50,619	-				+0.7
50,619	-				+0.0
50,619	-				-1.0
50,619	-				-0.3
50,619	-				-0.5
50,619	-				-0.3
50,619	-				+0.2
50,619	-				+2.1
50,619	-				+0.2
50,619	-				+0.1
50,619	-				-0.2
50,640	+				-0.8
50,640	+				+0.0
50,640	+				+0.4
50,641	-				-0.2
50,641	-				-0.2
50,641	-				-0.2
50,641	-				+0.3
50,784	+				+0.1
50,784	+				+0.8
50,784	+				+0.4
50,784	+				+0.2
50,784	+				-2.9
50,785	-				+1.8
50,785	-				+0.5
50,785	-				-0.2
50,785	-				-0.0
50,785	-				+0.2
50,785	-				-0.1
50,785	-				-1.2
50,827	+		GFF5426	0.14	+0.1
50,827	+		GFF5426	0.14	-0.5
50,827	+		GFF5426	0.14	-0.3
50,827	+		GFF5426	0.14	-0.3
50,827	+		GFF5426	0.14	-0.8
50,827	+		GFF5426	0.14	+1.8
50,827	+		GFF5426	0.14	-0.4
50,827	+		GFF5426	0.14	-0.4
50,827	+		GFF5426	0.14	+0.3
50,827	+		GFF5426	0.14	-0.7
50,827	+		GFF5426	0.14	-1.4
50,827	+		GFF5426	0.14	-0.2
50,827	+		GFF5426	0.14	-0.0
50,828	-		GFF5426	0.14	-0.0
50,828	-		GFF5426	0.14	+1.5
50,828	-		GFF5426	0.14	-0.2
50,828	-		GFF5426	0.14	-0.4
50,828	-		GFF5426	0.14	-0.4
50,828	-		GFF5426	0.14	+1.1
50,828	-		GFF5426	0.14	-2.6
50,828	-		GFF5426	0.14	-0.6
50,828	-		GFF5426	0.14	+1.2
50,828	-		GFF5426	0.14	-1.0
50,828	-		GFF5426	0.14	-0.6
50,828	-		GFF5426	0.14	-0.5
50,828	-		GFF5426	0.14	+2.0
50,931	+		GFF5426	0.33	-0.0
50,931	+		GFF5426	0.33	+0.0
50,932	-		GFF5426	0.33	+1.3
51,015	+		GFF5426	0.48	-0.3
51,015	+		GFF5426	0.48	-0.6
51,047	+		GFF5426	0.54	-1.2