Strain Fitness in Variovorax sp. SCN45 around GFF5367

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5366 and GFF5367 overlap by 4 nucleotidesGFF5367 and GFF5368 overlap by 4 nucleotides GFF5366 - L-Proline/Glycine betaine transporter ProP, at 239,159 to 240,511 GFF5366 GFF5367 - GTP cyclohydrolase 1 type 2 homolog YbgI, at 240,508 to 241,281 GFF5367 GFF5368 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 241,278 to 242,321 GFF5368 Position (kb) 240 241 242Strain fitness (log2 ratio) -1 0 1at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.729 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.924 kb on + strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.978 kb on + strand, within GFF5366at 239.978 kb on + strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.990 kb on + strand, within GFF5366at 239.990 kb on + strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 240.155 kb on + strand, within GFF5366at 240.155 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.165 kb on - strand, within GFF5366at 240.206 kb on + strand, within GFF5366at 240.206 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.395 kb on + strandat 240.395 kb on + strandat 240.395 kb on + strandat 240.396 kb on - strandat 240.396 kb on - strandat 240.578 kb on - strandat 240.799 kb on + strand, within GFF5367at 241.069 kb on + strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.141 kb on + strand, within GFF5367at 241.199 kb on - strand, within GFF5367

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
239,516 + GFF5366 0.26 +0.9
239,516 + GFF5366 0.26 -0.3
239,516 + GFF5366 0.26 -0.6
239,516 + GFF5366 0.26 +0.7
239,516 + GFF5366 0.26 -0.8
239,517 - GFF5366 0.26 -0.9
239,517 - GFF5366 0.26 -0.7
239,517 - GFF5366 0.26 -0.9
239,517 - GFF5366 0.26 -0.2
239,729 + GFF5366 0.42 +0.5
239,807 + GFF5366 0.48 +1.3
239,807 + GFF5366 0.48 -0.1
239,807 + GFF5366 0.48 +0.4
239,807 + GFF5366 0.48 -0.2
239,807 + GFF5366 0.48 -0.5
239,807 + GFF5366 0.48 +0.5
239,807 + GFF5366 0.48 -0.8
239,808 - GFF5366 0.48 +0.3
239,808 - GFF5366 0.48 -0.1
239,808 - GFF5366 0.48 -0.7
239,924 + GFF5366 0.57 +0.3
239,925 - GFF5366 0.57 -0.4
239,925 - GFF5366 0.57 -0.7
239,925 - GFF5366 0.57 +0.0
239,978 + GFF5366 0.61 -1.2
239,978 + GFF5366 0.61 -0.5
239,979 - GFF5366 0.61 -0.2
239,979 - GFF5366 0.61 +0.4
239,979 - GFF5366 0.61 -0.2
239,990 + GFF5366 0.61 +0.8
239,990 + GFF5366 0.61 -1.0
239,991 - GFF5366 0.61 +0.3
239,991 - GFF5366 0.61 +1.1
239,991 - GFF5366 0.61 -0.2
239,991 - GFF5366 0.61 -0.3
239,991 - GFF5366 0.61 +1.0
240,155 + GFF5366 0.74 +1.3
240,155 + GFF5366 0.74 -0.4
240,164 + GFF5366 0.74 +0.0
240,164 + GFF5366 0.74 -1.3
240,164 + GFF5366 0.74 +1.2
240,164 + GFF5366 0.74 -1.2
240,165 - GFF5366 0.74 -0.1
240,206 + GFF5366 0.77 -0.1
240,206 + GFF5366 0.77 -0.6
240,308 + GFF5366 0.85 -0.3
240,308 + GFF5366 0.85 +0.9
240,308 + GFF5366 0.85 +0.1
240,308 + GFF5366 0.85 -1.0
240,308 + GFF5366 0.85 +0.4
240,308 + GFF5366 0.85 +0.6
240,309 - GFF5366 0.85 +1.1
240,309 - GFF5366 0.85 -1.5
240,309 - GFF5366 0.85 -0.2
240,309 - GFF5366 0.85 -1.0
240,309 - GFF5366 0.85 +1.0
240,320 + GFF5366 0.86 -0.1
240,320 + GFF5366 0.86 +0.4
240,320 + GFF5366 0.86 +0.9
240,320 + GFF5366 0.86 -0.5
240,320 + GFF5366 0.86 +0.3
240,320 + GFF5366 0.86 -0.3
240,321 - GFF5366 0.86 -0.4
240,321 - GFF5366 0.86 +0.0
240,321 - GFF5366 0.86 -0.1
240,321 - GFF5366 0.86 -0.6
240,321 - GFF5366 0.86 +0.1
240,395 + -1.4
240,395 + -0.7
240,395 + -0.8
240,396 - -1.2
240,396 - +1.1
240,578 - +1.4
240,799 + GFF5367 0.38 -0.1
241,069 + GFF5367 0.72 -0.4
241,070 - GFF5367 0.73 +1.6
241,070 - GFF5367 0.73 +1.3
241,070 - GFF5367 0.73 +0.7
241,070 - GFF5367 0.73 +1.1
241,070 - GFF5367 0.73 +0.3
241,141 + GFF5367 0.82 +0.3
241,199 - GFF5367 0.89 +0.6

Or see this region's nucleotide sequence