Strain Fitness in Variovorax sp. SCN45 around GFF5294

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5293 and GFF5294 are separated by 6 nucleotidesGFF5294 and GFF5295 are separated by 179 nucleotides GFF5293 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 164,802 to 166,052 GFF5293 GFF5294 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 166,059 to 167,648 GFF5294 GFF5295 - Ferrichrome-iron receptor, at 167,828 to 169,948 GFF5295 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1 2 3at 165.594 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.594 kb on + strand, within GFF5293at 165.595 kb on - strand, within GFF5293at 165.595 kb on - strand, within GFF5293at 166.060 kb on + strandat 166.060 kb on + strandat 166.061 kb on - strandat 166.240 kb on + strand, within GFF5294at 166.240 kb on + strand, within GFF5294at 166.453 kb on + strand, within GFF5294at 166.453 kb on + strand, within GFF5294at 166.454 kb on - strand, within GFF5294at 166.454 kb on - strand, within GFF5294at 166.454 kb on - strand, within GFF5294at 166.489 kb on + strand, within GFF5294at 166.498 kb on + strand, within GFF5294at 166.499 kb on - strand, within GFF5294at 166.499 kb on - strand, within GFF5294at 166.499 kb on - strand, within GFF5294at 166.499 kb on - strand, within GFF5294at 166.499 kb on - strand, within GFF5294at 166.618 kb on + strand, within GFF5294at 166.618 kb on + strand, within GFF5294at 166.618 kb on + strand, within GFF5294at 166.619 kb on - strand, within GFF5294at 166.619 kb on - strand, within GFF5294at 166.619 kb on - strand, within GFF5294at 166.951 kb on + strand, within GFF5294at 166.951 kb on + strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 166.952 kb on - strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.263 kb on + strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.264 kb on - strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.362 kb on + strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.363 kb on - strand, within GFF5294at 167.691 kb on + strandat 167.888 kb on + strandat 167.888 kb on + strandat 167.888 kb on + strandat 167.888 kb on + strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.889 kb on - strandat 167.923 kb on + strandat 167.923 kb on + strandat 167.924 kb on - strandat 167.924 kb on - strandat 167.924 kb on - strandat 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.128 kb on + strand, within GFF5295at 168.129 kb on - strand, within GFF5295at 168.129 kb on - strand, within GFF5295at 168.129 kb on - strand, within GFF5295at 168.213 kb on - strand, within GFF5295at 168.213 kb on - strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.233 kb on + strand, within GFF5295at 168.234 kb on - strand, within GFF5295at 168.234 kb on - strand, within GFF5295at 168.248 kb on + strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.249 kb on - strand, within GFF5295at 168.276 kb on - strand, within GFF5295at 168.479 kb on + strand, within GFF5295at 168.479 kb on + strand, within GFF5295at 168.480 kb on - strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.524 kb on + strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.525 kb on - strand, within GFF5295at 168.529 kb on - strand, within GFF5295

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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165,594 + GFF5293 0.63 -0.5
165,594 + GFF5293 0.63 +1.6
165,594 + GFF5293 0.63 -0.7
165,594 + GFF5293 0.63 +0.6
165,595 - GFF5293 0.63 -0.2
165,595 - GFF5293 0.63 -0.3
166,060 + -0.1
166,060 + +0.1
166,061 - -1.2
166,240 + GFF5294 0.11 +0.0
166,240 + GFF5294 0.11 +0.1
166,453 + GFF5294 0.25 -0.4
166,453 + GFF5294 0.25 +1.3
166,454 - GFF5294 0.25 +1.0
166,454 - GFF5294 0.25 +0.6
166,454 - GFF5294 0.25 -0.1
166,489 + GFF5294 0.27 -0.4
166,498 + GFF5294 0.28 +0.4
166,499 - GFF5294 0.28 +0.2
166,499 - GFF5294 0.28 -0.6
166,499 - GFF5294 0.28 -1.8
166,499 - GFF5294 0.28 -0.1
166,499 - GFF5294 0.28 +1.1
166,618 + GFF5294 0.35 +0.0
166,618 + GFF5294 0.35 +0.0
166,618 + GFF5294 0.35 +0.2
166,619 - GFF5294 0.35 +1.4
166,619 - GFF5294 0.35 -0.1
166,619 - GFF5294 0.35 -1.6
166,951 + GFF5294 0.56 -1.1
166,951 + GFF5294 0.56 +0.7
166,952 - GFF5294 0.56 -0.3
166,952 - GFF5294 0.56 -1.5
166,952 - GFF5294 0.56 +0.1
166,952 - GFF5294 0.56 -1.0
167,263 + GFF5294 0.76 -1.2
167,263 + GFF5294 0.76 -0.2
167,263 + GFF5294 0.76 -1.3
167,263 + GFF5294 0.76 +1.6
167,263 + GFF5294 0.76 -0.2
167,263 + GFF5294 0.76 +1.4
167,264 - GFF5294 0.76 -1.0
167,264 - GFF5294 0.76 +0.3
167,264 - GFF5294 0.76 +0.5
167,264 - GFF5294 0.76 +1.0
167,264 - GFF5294 0.76 +1.3
167,264 - GFF5294 0.76 +0.5
167,362 + GFF5294 0.82 -0.3
167,362 + GFF5294 0.82 -0.3
167,362 + GFF5294 0.82 -0.3
167,362 + GFF5294 0.82 +0.0
167,362 + GFF5294 0.82 +0.1
167,362 + GFF5294 0.82 -0.7
167,362 + GFF5294 0.82 +0.4
167,363 - GFF5294 0.82 -0.4
167,363 - GFF5294 0.82 +0.2
167,363 - GFF5294 0.82 +0.1
167,363 - GFF5294 0.82 +3.2
167,363 - GFF5294 0.82 -0.3
167,363 - GFF5294 0.82 -0.4
167,363 - GFF5294 0.82 -0.0
167,691 + +0.1
167,888 + -0.7
167,888 + +0.1
167,888 + -0.5
167,888 + -2.6
167,889 - -0.1
167,889 - +0.2
167,889 - +1.2
167,889 - -0.1
167,889 - +0.8
167,923 + +0.6
167,923 + -0.2
167,924 - +0.5
167,924 - -1.3
167,924 - -0.4
168,128 + GFF5295 0.14 +0.3
168,128 + GFF5295 0.14 -0.3
168,128 + GFF5295 0.14 +0.6
168,128 + GFF5295 0.14 +2.0
168,128 + GFF5295 0.14 -0.2
168,128 + GFF5295 0.14 -0.4
168,129 - GFF5295 0.14 -1.6
168,129 - GFF5295 0.14 -0.1
168,129 - GFF5295 0.14 -0.1
168,213 - GFF5295 0.18 -0.5
168,213 - GFF5295 0.18 -0.7
168,233 + GFF5295 0.19 +1.6
168,233 + GFF5295 0.19 -0.0
168,233 + GFF5295 0.19 -0.3
168,233 + GFF5295 0.19 +0.5
168,234 - GFF5295 0.19 -0.0
168,234 - GFF5295 0.19 +0.4
168,248 + GFF5295 0.20 +0.7
168,249 - GFF5295 0.20 -0.6
168,249 - GFF5295 0.20 -0.2
168,249 - GFF5295 0.20 +1.3
168,249 - GFF5295 0.20 +0.1
168,249 - GFF5295 0.20 +0.3
168,276 - GFF5295 0.21 +0.0
168,479 + GFF5295 0.31 -0.7
168,479 + GFF5295 0.31 -0.2
168,480 - GFF5295 0.31 +0.3
168,524 + GFF5295 0.33 -0.4
168,524 + GFF5295 0.33 +1.8
168,524 + GFF5295 0.33 -0.7
168,524 + GFF5295 0.33 +0.8
168,525 - GFF5295 0.33 +0.4
168,525 - GFF5295 0.33 -0.6
168,525 - GFF5295 0.33 -1.1
168,525 - GFF5295 0.33 -0.0
168,525 - GFF5295 0.33 +0.8
168,529 - GFF5295 0.33 +0.1

Or see this region's nucleotide sequence