Strain Fitness in Variovorax sp. SCN45 around GFF5254

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5253 and GFF5254 are separated by 31 nucleotidesGFF5254 and GFF5255 are separated by 157 nucleotides GFF5253 - Amidohydrolase family protein, at 117,498 to 118,769 GFF5253 GFF5254 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 118,801 to 120,384 GFF5254 GFF5255 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 120,542 to 121,453 GFF5255 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 117.895 kb on - strand, within GFF5253at 118.084 kb on - strand, within GFF5253at 118.149 kb on + strand, within GFF5253at 118.150 kb on - strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.425 kb on + strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.426 kb on - strand, within GFF5253at 118.437 kb on + strand, within GFF5253at 118.437 kb on + strand, within GFF5253at 118.437 kb on + strand, within GFF5253at 118.438 kb on - strand, within GFF5253at 118.438 kb on - strand, within GFF5253at 118.587 kb on + strand, within GFF5253at 118.588 kb on - strand, within GFF5253at 118.588 kb on - strand, within GFF5253at 118.641 kb on + strand, within GFF5253at 118.911 kb on - strandat 118.969 kb on + strand, within GFF5254at 118.969 kb on + strand, within GFF5254at 118.969 kb on + strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 118.970 kb on - strand, within GFF5254at 119.339 kb on - strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.434 kb on + strand, within GFF5254at 119.435 kb on - strand, within GFF5254at 119.659 kb on + strand, within GFF5254at 119.659 kb on + strand, within GFF5254at 119.660 kb on - strand, within GFF5254at 119.660 kb on - strand, within GFF5254at 119.716 kb on + strand, within GFF5254at 119.716 kb on + strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.839 kb on + strand, within GFF5254at 119.839 kb on + strand, within GFF5254at 119.840 kb on - strand, within GFF5254at 119.840 kb on - strand, within GFF5254at 119.926 kb on + strand, within GFF5254at 119.927 kb on - strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.160 kb on + strand, within GFF5254at 120.160 kb on + strand, within GFF5254at 120.355 kb on + strandat 120.355 kb on + strandat 120.355 kb on + strandat 120.355 kb on + strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.464 kb on + strandat 120.464 kb on + strandat 120.464 kb on + strandat 120.465 kb on - strandat 120.758 kb on + strand, within GFF5255at 120.758 kb on + strand, within GFF5255at 120.758 kb on + strand, within GFF5255at 120.759 kb on - strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.933 kb on + strand, within GFF5255at 120.933 kb on + strand, within GFF5255at 120.934 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.331 kb on + strand, within GFF5255at 121.331 kb on + strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.332 kb on - strand, within GFF5255

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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117,895 - GFF5253 0.31 +0.3
118,084 - GFF5253 0.46 -1.0
118,149 + GFF5253 0.51 +2.0
118,150 - GFF5253 0.51 -0.1
118,425 + GFF5253 0.73 -0.6
118,425 + GFF5253 0.73 -1.4
118,425 + GFF5253 0.73 -1.7
118,425 + GFF5253 0.73 -0.5
118,425 + GFF5253 0.73 -0.7
118,426 - GFF5253 0.73 -0.1
118,426 - GFF5253 0.73 +0.0
118,426 - GFF5253 0.73 -0.5
118,426 - GFF5253 0.73 +2.3
118,426 - GFF5253 0.73 -0.1
118,426 - GFF5253 0.73 +0.6
118,437 + GFF5253 0.74 +0.3
118,437 + GFF5253 0.74 -1.0
118,437 + GFF5253 0.74 +1.1
118,438 - GFF5253 0.74 +0.1
118,438 - GFF5253 0.74 -2.0
118,587 + GFF5253 0.86 +0.2
118,588 - GFF5253 0.86 +1.1
118,588 - GFF5253 0.86 +0.3
118,641 + GFF5253 0.90 -0.3
118,911 - -0.6
118,969 + GFF5254 0.11 +0.5
118,969 + GFF5254 0.11 -0.2
118,969 + GFF5254 0.11 -1.4
118,970 - GFF5254 0.11 +0.6
118,970 - GFF5254 0.11 +0.4
118,970 - GFF5254 0.11 +0.0
118,970 - GFF5254 0.11 -1.3
119,339 - GFF5254 0.34 +0.3
119,434 + GFF5254 0.40 +1.6
119,434 + GFF5254 0.40 -0.1
119,434 + GFF5254 0.40 +1.0
119,434 + GFF5254 0.40 +0.6
119,434 + GFF5254 0.40 +0.0
119,435 - GFF5254 0.40 -0.1
119,659 + GFF5254 0.54 +0.5
119,659 + GFF5254 0.54 +0.9
119,660 - GFF5254 0.54 +1.2
119,660 - GFF5254 0.54 -0.3
119,716 + GFF5254 0.58 +0.0
119,716 + GFF5254 0.58 +0.3
119,717 - GFF5254 0.58 +0.6
119,717 - GFF5254 0.58 -0.6
119,717 - GFF5254 0.58 +0.2
119,717 - GFF5254 0.58 +0.1
119,839 + GFF5254 0.66 -0.2
119,839 + GFF5254 0.66 -2.0
119,840 - GFF5254 0.66 +0.1
119,840 - GFF5254 0.66 -0.2
119,926 + GFF5254 0.71 +0.0
119,927 - GFF5254 0.71 +0.3
120,019 + GFF5254 0.77 -0.2
120,019 + GFF5254 0.77 -2.2
120,019 + GFF5254 0.77 -1.7
120,019 + GFF5254 0.77 +0.0
120,019 + GFF5254 0.77 -0.7
120,019 + GFF5254 0.77 +0.2
120,020 - GFF5254 0.77 +0.6
120,020 - GFF5254 0.77 -0.6
120,020 - GFF5254 0.77 -0.3
120,020 - GFF5254 0.77 -1.9
120,020 - GFF5254 0.77 +1.6
120,020 - GFF5254 0.77 -1.3
120,020 - GFF5254 0.77 +0.6
120,020 - GFF5254 0.77 -1.1
120,020 - GFF5254 0.77 -0.3
120,020 - GFF5254 0.77 -0.3
120,055 + GFF5254 0.79 -0.2
120,055 + GFF5254 0.79 -0.0
120,055 + GFF5254 0.79 -0.1
120,055 + GFF5254 0.79 +1.3
120,055 + GFF5254 0.79 +0.3
120,056 - GFF5254 0.79 -0.4
120,056 - GFF5254 0.79 -2.1
120,056 - GFF5254 0.79 +2.3
120,056 - GFF5254 0.79 -0.1
120,056 - GFF5254 0.79 +0.6
120,056 - GFF5254 0.79 -0.8
120,056 - GFF5254 0.79 -0.0
120,056 - GFF5254 0.79 +0.7
120,082 + GFF5254 0.81 -0.7
120,082 + GFF5254 0.81 -0.3
120,082 + GFF5254 0.81 +0.6
120,082 + GFF5254 0.81 -0.4
120,082 + GFF5254 0.81 +0.1
120,083 - GFF5254 0.81 +0.3
120,083 - GFF5254 0.81 +0.5
120,083 - GFF5254 0.81 +0.1
120,083 - GFF5254 0.81 -1.2
120,083 - GFF5254 0.81 -0.5
120,160 + GFF5254 0.86 +0.4
120,160 + GFF5254 0.86 +0.3
120,355 + +0.7
120,355 + -0.0
120,355 + +0.4
120,355 + +0.2
120,356 - -0.5
120,356 - -1.2
120,356 - +0.6
120,356 - -2.6
120,356 - -0.2
120,464 + -0.5
120,464 + -0.1
120,464 + -0.3
120,465 - -0.5
120,758 + GFF5255 0.24 +0.1
120,758 + GFF5255 0.24 +1.2
120,758 + GFF5255 0.24 -2.4
120,759 - GFF5255 0.24 -2.4
120,809 + GFF5255 0.29 -0.1
120,809 + GFF5255 0.29 +1.2
120,809 + GFF5255 0.29 +1.3
120,809 + GFF5255 0.29 -1.0
120,809 + GFF5255 0.29 +0.1
120,809 + GFF5255 0.29 -0.9
120,810 - GFF5255 0.29 +0.7
120,810 - GFF5255 0.29 -0.1
120,810 - GFF5255 0.29 +0.1
120,933 + GFF5255 0.43 -0.5
120,933 + GFF5255 0.43 -0.4
120,934 - GFF5255 0.43 +0.3
121,077 - GFF5255 0.59 -1.1
121,077 - GFF5255 0.59 +1.1
121,077 - GFF5255 0.59 +0.8
121,124 + GFF5255 0.64 -0.7
121,124 + GFF5255 0.64 -0.6
121,124 + GFF5255 0.64 -0.1
121,124 + GFF5255 0.64 +0.3
121,124 + GFF5255 0.64 -0.4
121,124 + GFF5255 0.64 +0.2
121,125 - GFF5255 0.64 +0.4
121,125 - GFF5255 0.64 -0.3
121,125 - GFF5255 0.64 -1.6
121,125 - GFF5255 0.64 +2.3
121,125 - GFF5255 0.64 -0.5
121,125 - GFF5255 0.64 -0.8
121,125 - GFF5255 0.64 +0.0
121,125 - GFF5255 0.64 -0.6
121,125 - GFF5255 0.64 +0.2
121,331 + GFF5255 0.87 -0.2
121,331 + GFF5255 0.87 -1.0
121,332 - GFF5255 0.87 -0.2
121,332 - GFF5255 0.87 +0.2
121,332 - GFF5255 0.87 -0.3

Or see this region's nucleotide sequence