Strain Fitness in Variovorax sp. SCN45 around GFF5252

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
115,619	-		GFF5251	0.45	-0.5
116,011	+		GFF5251	0.75	-0.2
116,330	-				+0.3
116,346	-				+0.4
116,346	-				-0.4
116,488	+				-0.7
116,488	+				-0.4
116,488	+				-0.8
116,488	+				-0.3
116,488	+				+0.4
116,488	+				+0.6
116,488	+				+0.2
116,488	+				-0.4
116,488	+				-0.7
116,488	+				-0.6
116,488	+				-1.4
116,488	+				+0.5
116,488	+				+0.4
116,488	+				-0.4
116,488	+				-0.2
116,488	+				+1.4
116,488	+				-0.3
116,488	+				-0.7
116,488	+				-0.8
116,489	-				-0.6
116,489	-				-0.3
116,489	-				-0.1
116,489	-				+0.3
116,489	-				+0.5
116,489	-				+0.0
116,489	-				-0.4
116,489	-				-1.4
116,489	-				+0.1
116,489	-				+0.3
116,489	-				+0.4
116,489	-				+0.2
116,489	-				-0.2
116,489	-				+0.2
116,529	+				+0.1
116,529	+				+0.7
116,529	+				+0.2
116,529	+				-0.7
116,529	+				+0.2
116,530	-				+0.9
116,530	-				-0.3
116,592	+				+0.8
116,592	+				-0.0
116,592	+				+0.0
116,592	+				-0.2
116,592	+				+0.6
116,600	+				-0.4
116,600	+				+0.6
116,600	+				-0.7
116,600	+				+0.8
116,600	+				-0.4
116,600	+				+0.3
116,600	+				-0.3
116,600	+				+0.8
116,600	+				+0.3
116,600	+				-0.6
116,601	-				-0.0
116,601	-				-0.7
116,601	-				+0.4
116,601	-				-0.3
116,601	-				-0.3
116,601	-				+0.4
116,601	-				-0.2
116,601	-				-0.5
116,867	+		GFF5252	0.36	-0.7
116,867	+		GFF5252	0.36	-0.6
116,867	+		GFF5252	0.36	-1.2
116,867	+		GFF5252	0.36	-0.6
116,867	+		GFF5252	0.36	-1.0
116,867	+		GFF5252	0.36	+0.2
116,868	-		GFF5252	0.36	-0.4
116,868	-		GFF5252	0.36	-0.9
117,170	+		GFF5252	0.67	+0.5
117,170	+		GFF5252	0.67	+0.4
117,170	+		GFF5252	0.67	-0.5
117,170	+		GFF5252	0.67	-0.8
117,170	+		GFF5252	0.67	-1.5
117,170	+		GFF5252	0.67	-0.2
117,170	+		GFF5252	0.67	-0.4
117,170	+		GFF5252	0.67	-0.6
117,171	-		GFF5252	0.67	-0.6
117,171	-		GFF5252	0.67	+1.1
117,171	-		GFF5252	0.67	-0.3
117,171	-		GFF5252	0.67	-0.6
117,171	-		GFF5252	0.67	-0.2
117,171	-		GFF5252	0.67	-0.4
117,171	-		GFF5252	0.67	-0.9
117,171	-		GFF5252	0.67	-0.7
117,171	-		GFF5252	0.67	-0.0
117,171	-		GFF5252	0.67	-0.9
117,389	+		GFF5252	0.89	-0.8
117,389	+		GFF5252	0.89	+0.5
117,390	-		GFF5252	0.89	-0.1
117,414	-				-0.4
117,446	+				+1.6
117,446	+				-0.3
117,446	+				-0.1
117,446	+				-1.1
117,446	+				-0.1
117,446	+				+0.1
117,446	+				+0.2
117,446	+				+0.2
117,446	+				-0.4
117,447	-				-0.3
117,447	-				+1.6
117,447	-				+0.0
117,447	-				-0.6
117,447	-				-0.6
117,447	-				+0.5
117,447	-				+2.3
117,447	-				-0.6
117,571	-				-0.9
117,636	+		GFF5253	0.11	+0.1
117,636	+		GFF5253	0.11	-1.0
117,636	+		GFF5253	0.11	+0.1
117,636	+		GFF5253	0.11	-0.7
117,636	+		GFF5253	0.11	-1.1
117,636	+		GFF5253	0.11	+0.3
117,636	+		GFF5253	0.11	-0.7
117,636	+		GFF5253	0.11	+0.2
117,636	+		GFF5253	0.11	-0.5
117,636	+		GFF5253	0.11	-0.5
117,637	-		GFF5253	0.11	-0.8
117,637	-		GFF5253	0.11	-0.2
117,637	-		GFF5253	0.11	-1.0
117,637	-		GFF5253	0.11	-0.3
117,637	-		GFF5253	0.11	+0.2
117,637	-		GFF5253	0.11	-0.1
117,637	-		GFF5253	0.11	-1.4
117,895	-		GFF5253	0.31	+0.3
118,084	-		GFF5253	0.46	-1.0
118,149	+		GFF5253	0.51	+2.0
118,150	-		GFF5253	0.51	-0.1
118,425	+		GFF5253	0.73	-0.6
118,425	+		GFF5253	0.73	-1.4
118,425	+		GFF5253	0.73	-1.7
118,425	+		GFF5253	0.73	-0.5
118,425	+		GFF5253	0.73	-0.7
118,426	-		GFF5253	0.73	-0.1
118,426	-		GFF5253	0.73	+0.0
118,426	-		GFF5253	0.73	-0.5
118,426	-		GFF5253	0.73	+2.3
118,426	-		GFF5253	0.73	-0.1
118,426	-		GFF5253	0.73	+0.6
118,437	+		GFF5253	0.74	+0.3
118,437	+		GFF5253	0.74	-1.0
118,437	+		GFF5253	0.74	+1.1
118,438	-		GFF5253	0.74	+0.1
118,438	-		GFF5253	0.74	-2.0