Strain Fitness in Variovorax sp. SCN45 around GFF5239

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
104,344	+		GFF5238	0.13	-1.7
104,345	-		GFF5238	0.13	-0.0
104,345	-		GFF5238	0.13	-0.3
104,345	-		GFF5238	0.13	-0.7
104,650	+		GFF5238	0.42	-1.1
104,650	+		GFF5238	0.42	+2.0
104,651	-		GFF5238	0.42	-0.8
105,440	+		GFF5239	0.72	-1.8
105,440	+		GFF5239	0.72	+0.1
105,441	-		GFF5239	0.72	-1.1
105,441	-		GFF5239	0.72	-0.6
105,454	-		GFF5239	0.78	+0.2
105,454	-		GFF5239	0.78	+0.9
105,618	+				+0.1
105,618	+				-0.4
105,619	-				+0.1
105,667	+		GFF5240	0.13	+0.3
105,668	-		GFF5240	0.13	-1.0
105,668	-		GFF5240	0.13	+1.3
105,668	-		GFF5240	0.13	+1.0
105,668	-		GFF5240	0.13	-0.6
105,895	+		GFF5240	0.37	-0.6
105,895	+		GFF5240	0.37	+0.1
105,895	+		GFF5240	0.37	+0.1
105,895	+		GFF5240	0.37	-0.4
105,895	+		GFF5240	0.37	-0.0
105,896	-		GFF5240	0.37	-1.4
105,896	-		GFF5240	0.37	+0.1