Strain Fitness in Variovorax sp. SCN45 around GFF5201

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
61,218	+		GFF5200	0.55	+0.6
61,219	-		GFF5200	0.55	-1.3
61,512	+		GFF5200	0.72	-0.2
61,512	+		GFF5200	0.72	-0.7
61,512	+		GFF5200	0.72	+0.3
61,512	+		GFF5200	0.72	-0.3
61,593	+		GFF5200	0.76	-0.5
61,701	+		GFF5200	0.83	+1.1
61,706	+		GFF5200	0.83	+0.3
61,706	+		GFF5200	0.83	+0.8
61,911	+				-0.1
61,911	+				-1.4
61,911	+				-0.4
62,026	-				+1.3
62,223	+		GFF5201	0.23	+0.2
62,260	-		GFF5201	0.27	-0.7
62,385	+		GFF5201	0.41	-0.4
62,385	+		GFF5201	0.41	+1.1
62,385	+		GFF5201	0.41	+0.6
62,385	+		GFF5201	0.41	-0.5
62,386	-		GFF5201	0.41	-2.0
62,386	-		GFF5201	0.41	-0.5
62,506	-		GFF5201	0.54	-0.1
62,506	-		GFF5201	0.54	+0.6
62,515	+		GFF5201	0.55	-1.8
62,516	-		GFF5201	0.55	-0.8
62,731	-		GFF5201	0.78	-0.6
62,731	-		GFF5201	0.78	-0.3
62,757	+		GFF5201	0.81	-1.6
62,758	-		GFF5201	0.81	-0.0
63,068	+		GFF5202	0.30	+1.2
63,068	+		GFF5202	0.30	+0.7
63,068	+		GFF5202	0.30	+0.4
63,068	+		GFF5202	0.30	+1.3
63,069	-		GFF5202	0.31	-0.7
63,072	-		GFF5202	0.32	-0.0
63,125	+		GFF5202	0.51	+1.0
63,125	+		GFF5202	0.51	+0.4
63,125	+		GFF5202	0.51	-0.1
63,126	-		GFF5202	0.51	-0.6
63,137	+		GFF5202	0.55	-0.4
63,137	+		GFF5202	0.55	-1.4
63,138	+		GFF5202	0.56	-0.2
63,138	-		GFF5202	0.56	-0.3
63,230	-		GFF5202	0.89	-0.2
63,230	-		GFF5202	0.89	-0.1
63,230	-		GFF5202	0.89	+0.4
63,230	-		GFF5202	0.89	-0.3
63,280	-				+0.1
63,297	+				+0.5
63,297	+				+0.2
63,297	+				-1.9
63,297	+				+1.2
63,297	+				-0.0
63,297	+				-0.7
63,297	+				+0.3
63,297	+				-1.1
63,297	+				+0.8
63,297	+				+1.3
63,298	-				+1.5
63,298	-				-0.7
63,298	-				-0.4
63,298	-				+0.6
63,298	-				-0.2
63,298	-				-1.3
63,298	-				-0.0
63,298	-				+0.9
63,298	-				-0.2
63,299	+				+1.3
63,299	+				-0.9
63,299	+				-0.2
63,299	+				+0.3
63,299	+				+2.1
63,299	+				+0.1
63,299	+				-1.0
63,300	-				+0.0
63,300	-				-0.2
63,300	-				-0.4
63,300	-				-0.5
63,300	-				+0.3
63,300	-				-1.5
63,300	-				-0.5
63,303	+				-0.0
63,303	+				-0.7
63,303	+				+0.2
63,303	+				-0.4
63,303	+				-0.6
63,303	+				-0.5
63,303	+				-0.2
63,303	+				+0.6
63,303	+				+1.0
63,303	+				+1.2
63,304	-				+0.0
63,304	-				-0.7
63,304	-				+1.0
63,304	-				+0.7
63,304	-				+0.4
63,304	-				-0.7
63,304	-				-0.4
63,304	-				+1.0
63,304	-				-0.8
63,321	+				-0.6
63,347	+				-0.2
63,347	+				-0.7
63,758	+		GFF5203	0.77	+0.0
63,758	+		GFF5203	0.77	+0.3
63,846	+				+0.7
63,846	+				+0.4
63,847	-				+0.0
63,847	-				+0.5
63,847	-				+1.1
63,880	+				+1.0
63,880	+				+0.1
63,881	-				-1.0
63,906	-				-0.4
63,906	-				-0.2