Strain Fitness in Variovorax sp. SCN45 around GFF5196

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
55,106	+		GFF5195	0.86	-0.9
55,107	-		GFF5195	0.86	-0.9
55,115	+		GFF5195	0.87	-0.8
55,116	-		GFF5195	0.87	+0.1
55,209	-				+0.4
55,209	-				-1.5
55,515	+		GFF5196	0.17	-0.1
55,515	+		GFF5196	0.17	+0.6
55,515	+		GFF5196	0.17	+0.1
55,516	-		GFF5196	0.17	+0.6
55,633	-		GFF5196	0.27	+1.3
55,983	+		GFF5196	0.56	-0.2
56,041	-		GFF5196	0.60	-0.9
56,055	+		GFF5196	0.61	-0.3
56,148	+		GFF5196	0.69	+0.5
56,411	-				-1.5
56,505	+				+1.1
56,506	-				-2.1
56,594	+				-0.0
56,626	+				+1.1
56,978	-		GFF5197	0.29	-0.2
56,978	-		GFF5197	0.29	+2.4
57,166	+		GFF5197	0.42	+0.3
57,167	-		GFF5197	0.42	-0.3
57,167	-		GFF5197	0.42	-0.3
57,167	-		GFF5197	0.42	-0.2
57,191	+		GFF5197	0.43	+0.1