Strain Fitness in Variovorax sp. SCN45 around GFF5098

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
198,758	+		GFF5096	0.39	+0.2
198,758	+		GFF5096	0.39	-0.3
199,120	+		GFF5096	0.82	+1.2
199,120	+		GFF5096	0.82	+0.1
199,121	-		GFF5096	0.82	-0.7
199,301	+				-0.7
199,302	-				-0.2
199,430	+		GFF5097	0.37	-0.4
199,445	+		GFF5097	0.40	-0.0
199,485	-		GFF5097	0.50	-0.6
199,640	+		GFF5097	0.88	-0.4
199,640	+		GFF5097	0.88	+1.0
199,641	-		GFF5097	0.88	+0.0
199,816	+		GFF5098	0.15	-0.7
199,937	-		GFF5098	0.30	-0.3
200,095	+		GFF5098	0.49	+0.4
200,096	-		GFF5098	0.49	+0.6
200,276	-		GFF5098	0.72	-0.2
200,276	-		GFF5098	0.72	-0.6
200,276	-		GFF5098	0.72	+0.8
200,276	-		GFF5098	0.72	-0.7
200,598	+		GFF5099	0.10	+0.4
200,790	+		GFF5099	0.34	+1.8
200,790	+		GFF5099	0.34	-0.0
200,790	+		GFF5099	0.34	-0.5
200,791	-		GFF5099	0.34	-0.8
200,946	+		GFF5099	0.53	-0.8
200,946	+		GFF5099	0.53	-1.8
200,946	+		GFF5099	0.53	+0.3
200,946	+		GFF5099	0.53	-0.1
200,946	+		GFF5099	0.53	-0.5
200,946	+		GFF5099	0.53	+0.2
200,947	-		GFF5099	0.53	-1.0
200,947	-		GFF5099	0.53	+0.5
200,947	-		GFF5099	0.53	-0.5
201,294	+				+0.0
201,294	+				-0.1
201,294	+				-0.4
201,294	+				-0.1
201,294	+				+0.6
201,294	+				-0.7
201,295	-				+0.9
201,330	+				-0.3
201,330	+				+1.3
201,331	-				-0.8
201,331	-				-0.2
201,497	+		GFF5100	0.28	-0.3
201,497	+		GFF5100	0.28	+0.2