Strain Fitness in Variovorax sp. SCN45 around GFF5073

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5072 and GFF5073 overlap by 4 nucleotidesGFF5073 and GFF5074 are separated by 162 nucleotidesGFF5074 and GFF5075 are separated by 10 nucleotides GFF5072 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 174,628 to 175,854 GFF5072 GFF5073 - 3-oxoacyl-[ACP] synthase, at 175,851 to 176,690 GFF5073 GFF5074 - Two-component transcriptional response regulator Dtpsy_0213, OmpR family, at 176,853 to 177,575 GFF5074 GFF5075 - Two-component system sensor histidine kinase Dtpsy_0212, at 177,586 to 178,782 GFF5075 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2 3at 174.940 kb on + strand, within GFF5072at 174.940 kb on + strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 174.941 kb on - strand, within GFF5072at 175.009 kb on + strand, within GFF5072at 175.009 kb on + strand, within GFF5072at 175.010 kb on - strand, within GFF5072at 175.010 kb on - strand, within GFF5072at 175.405 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.522 kb on + strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.523 kb on - strand, within GFF5072at 175.787 kb on - strandat 175.787 kb on - strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.890 kb on + strandat 175.891 kb on - strandat 175.891 kb on - strandat 175.891 kb on - strandat 175.891 kb on - strandat 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.157 kb on + strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.158 kb on - strand, within GFF5073at 176.241 kb on + strand, within GFF5073at 176.241 kb on + strand, within GFF5073at 176.241 kb on + strand, within GFF5073at 176.373 kb on + strand, within GFF5073at 176.373 kb on + strand, within GFF5073at 176.374 kb on - strand, within GFF5073at 176.761 kb on - strandat 176.804 kb on + strandat 176.805 kb on - strandat 176.815 kb on - strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.926 kb on - strand, within GFF5074at 176.926 kb on - strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.098 kb on - strand, within GFF5074at 177.172 kb on - strand, within GFF5074at 177.172 kb on - strand, within GFF5074at 177.351 kb on + strand, within GFF5074at 177.351 kb on + strand, within GFF5074at 177.351 kb on + strand, within GFF5074at 177.352 kb on - strand, within GFF5074at 177.352 kb on - strand, within GFF5074at 177.352 kb on - strand, within GFF5074at 177.549 kb on + strandat 177.549 kb on + strandat 177.549 kb on + strandat 177.549 kb on + strandat 177.550 kb on - strandat 177.550 kb on - strandat 177.550 kb on - strandat 177.550 kb on - strandat 177.602 kb on - strandat 177.602 kb on - strandat 177.602 kb on - strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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174,940 + GFF5072 0.25 +0.4
174,940 + GFF5072 0.25 -1.2
174,941 - GFF5072 0.26 +0.7
174,941 - GFF5072 0.26 +0.3
174,941 - GFF5072 0.26 -0.9
174,941 - GFF5072 0.26 -1.2
175,009 + GFF5072 0.31 -0.2
175,009 + GFF5072 0.31 +0.5
175,010 - GFF5072 0.31 -0.9
175,010 - GFF5072 0.31 -0.2
175,405 + GFF5072 0.63 -0.1
175,522 + GFF5072 0.73 -0.6
175,522 + GFF5072 0.73 -1.0
175,522 + GFF5072 0.73 -1.4
175,522 + GFF5072 0.73 -1.7
175,523 - GFF5072 0.73 +0.1
175,523 - GFF5072 0.73 +0.3
175,523 - GFF5072 0.73 +0.2
175,523 - GFF5072 0.73 -0.2
175,523 - GFF5072 0.73 +1.6
175,523 - GFF5072 0.73 +0.3
175,523 - GFF5072 0.73 -1.1
175,523 - GFF5072 0.73 -0.4
175,523 - GFF5072 0.73 -1.0
175,787 - -0.7
175,787 - -2.2
175,890 + -2.4
175,890 + +0.2
175,890 + -0.2
175,890 + +1.1
175,890 + +0.5
175,890 + -1.3
175,891 - +0.8
175,891 - -0.3
175,891 - -0.3
175,891 - +1.4
176,157 + GFF5073 0.36 +0.4
176,157 + GFF5073 0.36 +0.4
176,157 + GFF5073 0.36 -0.9
176,157 + GFF5073 0.36 +0.2
176,157 + GFF5073 0.36 +0.9
176,157 + GFF5073 0.36 -0.7
176,157 + GFF5073 0.36 +0.4
176,157 + GFF5073 0.36 -1.2
176,157 + GFF5073 0.36 +0.4
176,158 - GFF5073 0.37 -0.7
176,158 - GFF5073 0.37 +2.2
176,158 - GFF5073 0.37 +0.4
176,158 - GFF5073 0.37 +0.2
176,158 - GFF5073 0.37 +1.5
176,158 - GFF5073 0.37 +0.4
176,158 - GFF5073 0.37 -0.4
176,158 - GFF5073 0.37 -1.0
176,158 - GFF5073 0.37 +0.2
176,158 - GFF5073 0.37 +0.0
176,158 - GFF5073 0.37 -1.2
176,158 - GFF5073 0.37 -0.5
176,158 - GFF5073 0.37 -1.3
176,241 + GFF5073 0.46 -0.9
176,241 + GFF5073 0.46 -0.3
176,241 + GFF5073 0.46 +0.2
176,373 + GFF5073 0.62 +1.3
176,373 + GFF5073 0.62 +0.8
176,374 - GFF5073 0.62 -0.0
176,761 - -0.6
176,804 + +0.3
176,805 - -0.0
176,815 - -0.1
176,925 + +1.3
176,925 + -0.6
176,925 + -0.5
176,925 + -0.2
176,925 + +0.2
176,926 - GFF5074 0.10 -0.9
176,926 - GFF5074 0.10 -0.6
177,097 + GFF5074 0.34 -1.7
177,097 + GFF5074 0.34 +0.3
177,097 + GFF5074 0.34 -0.2
177,097 + GFF5074 0.34 -0.2
177,097 + GFF5074 0.34 +0.4
177,098 - GFF5074 0.34 -0.2
177,172 - GFF5074 0.44 +0.1
177,172 - GFF5074 0.44 -0.7
177,351 + GFF5074 0.69 +2.8
177,351 + GFF5074 0.69 -0.9
177,351 + GFF5074 0.69 +0.6
177,352 - GFF5074 0.69 -2.3
177,352 - GFF5074 0.69 +0.3
177,352 - GFF5074 0.69 +0.3
177,549 + -1.9
177,549 + -1.3
177,549 + +1.4
177,549 + -0.5
177,550 - -0.2
177,550 - +0.4
177,550 - +0.6
177,550 - +1.0
177,602 - -0.5
177,602 - +0.2
177,602 - +0.1
177,616 + -1.0
177,616 + -1.1
177,616 + +0.9
177,616 + -0.6
177,616 + -0.5
177,616 + +0.7
177,616 + -0.1
177,617 - +0.1
177,617 - +0.4
177,617 - -0.6
177,617 - +1.6
177,617 - -1.4
177,617 - -0.4

Or see this region's nucleotide sequence