Strain Fitness in Variovorax sp. SCN45 around GFF4999

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4998 and GFF4999 are separated by 12 nucleotidesGFF4999 and GFF5000 overlap by 8 nucleotides GFF4998 - L-carnitine dehydratase/bile acid-inducible protein F, at 96,817 to 98,058 GFF4998 GFF4999 - hypothetical protein, at 98,071 to 98,385 GFF4999 GFF5000 - PUTATIVE ZINC PROTEASE PROTEIN, at 98,378 to 99,502 GFF5000 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 97.277 kb on + strand, within GFF4998at 97.277 kb on + strand, within GFF4998at 97.278 kb on - strand, within GFF4998at 97.278 kb on - strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.367 kb on + strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.368 kb on - strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.409 kb on + strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.410 kb on - strand, within GFF4998at 97.634 kb on + strand, within GFF4998at 97.925 kb on + strand, within GFF4998at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.273 kb on + strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.274 kb on - strand, within GFF4999at 98.370 kb on + strandat 98.371 kb on - strandat 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.505 kb on + strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.506 kb on - strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.571 kb on + strand, within GFF5000at 98.625 kb on + strand, within GFF5000at 98.626 kb on - strand, within GFF5000at 98.626 kb on - strand, within GFF5000at 98.671 kb on - strand, within GFF5000at 98.671 kb on - strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.754 kb on + strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.755 kb on - strand, within GFF5000at 98.830 kb on - strand, within GFF5000at 98.830 kb on - strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.904 kb on + strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.905 kb on - strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.937 kb on + strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 98.938 kb on - strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.057 kb on + strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.058 kb on - strand, within GFF5000at 99.073 kb on - strand, within GFF5000at 99.073 kb on - strand, within GFF5000at 99.073 kb on - strand, within GFF5000at 99.138 kb on + strand, within GFF5000at 99.138 kb on + strand, within GFF5000at 99.139 kb on - strand, within GFF5000at 99.139 kb on - strand, within GFF5000at 99.141 kb on + strand, within GFF5000at 99.142 kb on - strand, within GFF5000at 99.142 kb on - strand, within GFF5000at 99.142 kb on - strand, within GFF5000at 99.202 kb on - strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.255 kb on + strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.256 kb on - strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.264 kb on + strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000at 99.265 kb on - strand, within GFF5000

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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97,277 + GFF4998 0.37 -0.0
97,277 + GFF4998 0.37 -0.0
97,278 - GFF4998 0.37 -0.8
97,278 - GFF4998 0.37 +0.6
97,367 + GFF4998 0.44 +0.4
97,367 + GFF4998 0.44 -0.6
97,367 + GFF4998 0.44 -1.6
97,367 + GFF4998 0.44 -0.1
97,367 + GFF4998 0.44 -0.3
97,367 + GFF4998 0.44 -0.2
97,368 - GFF4998 0.44 -1.5
97,368 - GFF4998 0.44 -0.8
97,368 - GFF4998 0.44 -0.6
97,368 - GFF4998 0.44 +0.6
97,368 - GFF4998 0.44 -0.7
97,368 - GFF4998 0.44 -0.8
97,409 + GFF4998 0.48 -0.3
97,409 + GFF4998 0.48 -0.6
97,409 + GFF4998 0.48 +0.2
97,410 - GFF4998 0.48 +0.9
97,410 - GFF4998 0.48 -0.2
97,410 - GFF4998 0.48 -0.4
97,634 + GFF4998 0.66 -0.1
97,925 + GFF4998 0.89 -0.6
98,273 + GFF4999 0.64 -0.8
98,273 + GFF4999 0.64 -1.3
98,273 + GFF4999 0.64 -0.9
98,273 + GFF4999 0.64 -0.8
98,274 - GFF4999 0.64 +0.2
98,274 - GFF4999 0.64 +1.0
98,274 - GFF4999 0.64 -0.6
98,274 - GFF4999 0.64 -1.0
98,274 - GFF4999 0.64 -0.2
98,370 + +0.8
98,371 - -2.5
98,505 + GFF5000 0.11 -0.6
98,505 + GFF5000 0.11 -0.0
98,505 + GFF5000 0.11 -0.6
98,505 + GFF5000 0.11 -1.0
98,505 + GFF5000 0.11 -0.5
98,505 + GFF5000 0.11 -0.3
98,505 + GFF5000 0.11 +3.0
98,505 + GFF5000 0.11 +0.8
98,506 - GFF5000 0.11 -0.4
98,506 - GFF5000 0.11 +0.8
98,506 - GFF5000 0.11 -0.8
98,506 - GFF5000 0.11 -0.2
98,506 - GFF5000 0.11 -0.4
98,506 - GFF5000 0.11 -0.2
98,571 + GFF5000 0.17 -0.5
98,571 + GFF5000 0.17 -0.0
98,571 + GFF5000 0.17 -0.3
98,571 + GFF5000 0.17 -0.2
98,625 + GFF5000 0.22 +0.8
98,626 - GFF5000 0.22 -0.4
98,626 - GFF5000 0.22 +1.0
98,671 - GFF5000 0.26 -0.6
98,671 - GFF5000 0.26 -0.1
98,754 + GFF5000 0.33 -0.7
98,754 + GFF5000 0.33 -0.2
98,754 + GFF5000 0.33 +0.6
98,755 - GFF5000 0.34 -0.2
98,755 - GFF5000 0.34 +0.6
98,755 - GFF5000 0.34 -0.3
98,755 - GFF5000 0.34 -2.5
98,755 - GFF5000 0.34 +1.0
98,755 - GFF5000 0.34 -2.1
98,755 - GFF5000 0.34 +2.8
98,830 - GFF5000 0.40 -0.3
98,830 - GFF5000 0.40 +0.1
98,904 + GFF5000 0.47 +2.2
98,904 + GFF5000 0.47 +0.2
98,904 + GFF5000 0.47 +0.1
98,904 + GFF5000 0.47 -0.3
98,904 + GFF5000 0.47 -0.7
98,905 - GFF5000 0.47 -0.2
98,905 - GFF5000 0.47 -0.5
98,905 - GFF5000 0.47 +0.3
98,905 - GFF5000 0.47 +0.2
98,905 - GFF5000 0.47 +0.2
98,905 - GFF5000 0.47 +0.4
98,937 + GFF5000 0.50 -0.1
98,937 + GFF5000 0.50 +0.0
98,937 + GFF5000 0.50 -1.0
98,937 + GFF5000 0.50 +0.3
98,937 + GFF5000 0.50 -0.2
98,937 + GFF5000 0.50 -0.4
98,937 + GFF5000 0.50 +0.8
98,937 + GFF5000 0.50 -0.8
98,938 - GFF5000 0.50 +0.3
98,938 - GFF5000 0.50 -0.0
98,938 - GFF5000 0.50 -1.8
98,938 - GFF5000 0.50 +0.3
98,938 - GFF5000 0.50 +0.1
98,938 - GFF5000 0.50 -0.8
98,938 - GFF5000 0.50 -0.1
98,938 - GFF5000 0.50 -1.6
99,057 + GFF5000 0.60 -1.0
99,057 + GFF5000 0.60 -0.3
99,057 + GFF5000 0.60 +0.8
99,057 + GFF5000 0.60 -0.4
99,057 + GFF5000 0.60 +0.6
99,058 - GFF5000 0.60 +1.2
99,058 - GFF5000 0.60 -1.6
99,058 - GFF5000 0.60 +0.1
99,058 - GFF5000 0.60 -0.8
99,073 - GFF5000 0.62 -0.2
99,073 - GFF5000 0.62 -0.3
99,073 - GFF5000 0.62 -0.2
99,138 + GFF5000 0.68 +0.6
99,138 + GFF5000 0.68 -0.2
99,139 - GFF5000 0.68 +0.2
99,139 - GFF5000 0.68 -1.5
99,141 + GFF5000 0.68 +1.3
99,142 - GFF5000 0.68 -1.1
99,142 - GFF5000 0.68 -0.9
99,142 - GFF5000 0.68 +0.8
99,202 - GFF5000 0.73 -0.6
99,255 + GFF5000 0.78 -0.4
99,255 + GFF5000 0.78 +0.6
99,255 + GFF5000 0.78 +0.0
99,255 + GFF5000 0.78 +0.1
99,255 + GFF5000 0.78 +1.0
99,256 - GFF5000 0.78 -0.7
99,256 - GFF5000 0.78 -0.4
99,256 - GFF5000 0.78 -0.3
99,256 - GFF5000 0.78 -1.6
99,264 + GFF5000 0.79 +0.2
99,264 + GFF5000 0.79 -0.5
99,264 + GFF5000 0.79 -0.6
99,264 + GFF5000 0.79 -1.7
99,264 + GFF5000 0.79 -0.3
99,264 + GFF5000 0.79 +0.9
99,264 + GFF5000 0.79 +0.5
99,264 + GFF5000 0.79 +1.3
99,264 + GFF5000 0.79 -1.9
99,264 + GFF5000 0.79 -0.2
99,265 - GFF5000 0.79 -0.2
99,265 - GFF5000 0.79 +0.9
99,265 - GFF5000 0.79 +0.2
99,265 - GFF5000 0.79 +0.9
99,265 - GFF5000 0.79 -0.9
99,265 - GFF5000 0.79 +0.2
99,265 - GFF5000 0.79 +0.7
99,265 - GFF5000 0.79 +1.1
99,265 - GFF5000 0.79 -1.4
99,265 - GFF5000 0.79 +1.8
99,265 - GFF5000 0.79 +1.0
99,265 - GFF5000 0.79 -0.7
99,265 - GFF5000 0.79 +0.5
99,265 - GFF5000 0.79 -0.4
99,265 - GFF5000 0.79 +0.8
99,265 - GFF5000 0.79 +0.9
99,265 - GFF5000 0.79 -0.1
99,265 - GFF5000 0.79 -0.6
99,265 - GFF5000 0.79 -0.1
99,265 - GFF5000 0.79 +0.5
99,265 - GFF5000 0.79 -0.3

Or see this region's nucleotide sequence