Strain Fitness in Variovorax sp. SCN45 around GFF4958

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
57,932	-		GFF4957	0.32	-0.5
57,986	-		GFF4957	0.36	-0.6
58,156	+		GFF4957	0.50	-0.6
58,157	-		GFF4957	0.50	+0.2
58,157	-		GFF4957	0.50	-0.6
58,228	+		GFF4957	0.56	+0.4
58,228	+		GFF4957	0.56	+0.1
58,228	+		GFF4957	0.56	+0.6
58,474	+		GFF4957	0.77	+0.8
58,489	+		GFF4957	0.78	+0.4
58,585	+		GFF4957	0.86	+0.5
58,586	-		GFF4957	0.86	-0.9
58,586	-		GFF4957	0.86	-0.2
58,586	-		GFF4957	0.86	-0.7
58,627	+		GFF4957	0.89	-0.3
58,645	+				-0.2
58,729	+				-0.2
58,730	-				-0.4
58,730	-				+0.8
58,730	-				+0.0
58,730	-				-0.7
58,885	+				-0.0
58,886	-				+0.3
58,886	-				-0.9
58,886	-				+0.7
59,361	-		GFF4958	0.52	+0.1
59,556	+		GFF4958	0.73	-0.1
59,557	-		GFF4958	0.73	-0.1
59,557	-		GFF4958	0.73	+0.5
59,557	-		GFF4958	0.73	+0.5
59,744	+				-0.5
59,745	-				+1.4
59,745	-				-0.3
59,745	-				-0.2
59,745	-				-0.5
59,824	+				-1.6
59,824	+				-0.9
59,825	-				-0.7
59,899	+				+0.4
59,899	+				+2.3
59,899	+				+0.4
60,019	+		GFF4959	0.22	-0.5
60,145	+		GFF4959	0.35	-1.9
60,146	-		GFF4959	0.35	-0.6
60,184	+		GFF4959	0.38	-0.4
60,185	-		GFF4959	0.39	-0.1
60,230	-		GFF4959	0.43	+0.0