Strain Fitness in Variovorax sp. SCN45 around GFF494

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF493 and GFF494 overlap by 4 nucleotidesGFF494 and GFF495 are separated by 130 nucleotides GFF493 - RND efflux system, inner membrane transporter, at 533,749 to 536,907 GFF493 GFF494 - RND efflux system, membrane fusion protein, at 536,904 to 538,115 GFF494 GFF495 - Kup system potassium uptake protein, at 538,246 to 540,090 GFF495 Position (kb) 536 537 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 536.069 kb on + strand, within GFF493at 536.069 kb on + strand, within GFF493at 536.070 kb on - strand, within GFF493at 536.070 kb on - strand, within GFF493at 536.070 kb on - strand, within GFF493at 536.309 kb on + strand, within GFF493at 536.309 kb on + strand, within GFF493at 536.309 kb on + strand, within GFF493at 536.310 kb on - strand, within GFF493at 536.310 kb on - strand, within GFF493at 536.310 kb on - strand, within GFF493at 536.411 kb on + strand, within GFF493at 536.411 kb on + strand, within GFF493at 536.411 kb on + strand, within GFF493at 536.412 kb on - strand, within GFF493at 536.438 kb on + strand, within GFF493at 536.439 kb on - strand, within GFF493at 536.439 kb on - strand, within GFF493at 536.450 kb on + strand, within GFF493at 536.450 kb on + strand, within GFF493at 536.450 kb on + strand, within GFF493at 536.451 kb on - strand, within GFF493at 536.451 kb on - strand, within GFF493at 536.451 kb on - strand, within GFF493at 536.540 kb on + strand, within GFF493at 536.540 kb on + strand, within GFF493at 536.541 kb on - strand, within GFF493at 536.541 kb on - strand, within GFF493at 536.618 kb on + strandat 536.618 kb on + strandat 536.618 kb on + strandat 536.618 kb on + strandat 536.619 kb on - strandat 536.619 kb on - strandat 536.619 kb on - strandat 536.619 kb on - strandat 536.640 kb on - strandat 536.717 kb on + strandat 536.717 kb on + strandat 536.717 kb on + strandat 536.717 kb on + strandat 536.718 kb on - strandat 536.718 kb on - strandat 536.718 kb on - strandat 536.780 kb on + strandat 536.780 kb on + strandat 536.780 kb on + strandat 536.781 kb on - strandat 536.819 kb on + strandat 536.820 kb on - strandat 536.820 kb on - strandat 536.820 kb on - strandat 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.031 kb on + strand, within GFF494at 537.032 kb on - strand, within GFF494at 537.032 kb on - strand, within GFF494at 537.032 kb on - strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.753 kb on + strand, within GFF494at 537.753 kb on + strand, within GFF494at 537.754 kb on - strand, within GFF494at 537.815 kb on - strand, within GFF494at 537.815 kb on - strand, within GFF494at 538.165 kb on + strandat 538.175 kb on + strandat 538.175 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.187 kb on - strandat 538.187 kb on - strandat 538.210 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.295 kb on + strandat 538.295 kb on + strandat 538.295 kb on + strandat 538.296 kb on - strandat 538.296 kb on - strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.404 kb on - strandat 538.404 kb on - strandat 538.404 kb on - strandat 538.404 kb on - strandat 538.442 kb on + strand, within GFF495at 538.443 kb on - strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 539.012 kb on + strand, within GFF495at 539.012 kb on + strand, within GFF495at 539.012 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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536,069 + GFF493 0.73 +1.3
536,069 + GFF493 0.73 +0.6
536,070 - GFF493 0.73 -0.0
536,070 - GFF493 0.73 +0.2
536,070 - GFF493 0.73 +0.5
536,309 + GFF493 0.81 +0.7
536,309 + GFF493 0.81 -0.4
536,309 + GFF493 0.81 -0.7
536,310 - GFF493 0.81 -1.8
536,310 - GFF493 0.81 -0.3
536,310 - GFF493 0.81 +0.0
536,411 + GFF493 0.84 +0.4
536,411 + GFF493 0.84 +0.4
536,411 + GFF493 0.84 -0.7
536,412 - GFF493 0.84 -0.3
536,438 + GFF493 0.85 -0.2
536,439 - GFF493 0.85 +0.7
536,439 - GFF493 0.85 -0.7
536,450 + GFF493 0.86 -1.4
536,450 + GFF493 0.86 +0.1
536,450 + GFF493 0.86 +0.4
536,451 - GFF493 0.86 -0.4
536,451 - GFF493 0.86 +2.2
536,451 - GFF493 0.86 -0.0
536,540 + GFF493 0.88 +0.2
536,540 + GFF493 0.88 -1.0
536,541 - GFF493 0.88 -1.4
536,541 - GFF493 0.88 -0.0
536,618 + -0.5
536,618 + +0.4
536,618 + -0.2
536,618 + -0.1
536,619 - -1.8
536,619 - -0.9
536,619 - +1.1
536,619 - +0.2
536,640 - +0.4
536,717 + -0.9
536,717 + -0.1
536,717 + +0.3
536,717 + +0.7
536,718 - -0.4
536,718 - -0.4
536,718 - -2.4
536,780 + -0.9
536,780 + -0.3
536,780 + -0.3
536,781 - -0.8
536,819 + +0.1
536,820 - +0.0
536,820 - -0.1
536,820 - -0.0
537,031 + GFF494 0.10 -0.2
537,031 + GFF494 0.10 -0.0
537,031 + GFF494 0.10 +0.4
537,031 + GFF494 0.10 +1.2
537,031 + GFF494 0.10 -1.4
537,031 + GFF494 0.10 +0.4
537,032 - GFF494 0.11 -0.4
537,032 - GFF494 0.11 +1.2
537,032 - GFF494 0.11 -1.6
537,283 + GFF494 0.31 -3.0
537,283 + GFF494 0.31 -0.5
537,283 + GFF494 0.31 -1.1
537,283 + GFF494 0.31 -0.5
537,283 + GFF494 0.31 +0.7
537,283 + GFF494 0.31 -0.3
537,284 - GFF494 0.31 +1.1
537,284 - GFF494 0.31 -0.3
537,284 - GFF494 0.31 +0.7
537,340 + GFF494 0.36 -0.0
537,340 + GFF494 0.36 +0.3
537,340 + GFF494 0.36 +1.6
537,340 + GFF494 0.36 +0.3
537,340 + GFF494 0.36 -0.4
537,340 + GFF494 0.36 -0.2
537,340 + GFF494 0.36 +0.2
537,340 + GFF494 0.36 +0.6
537,340 + GFF494 0.36 -0.3
537,341 - GFF494 0.36 -0.8
537,341 - GFF494 0.36 -0.3
537,341 - GFF494 0.36 +0.3
537,341 - GFF494 0.36 +0.2
537,341 - GFF494 0.36 +0.1
537,598 + GFF494 0.57 +0.0
537,598 + GFF494 0.57 +0.2
537,598 + GFF494 0.57 +0.0
537,598 + GFF494 0.57 -2.0
537,598 + GFF494 0.57 -0.7
537,598 + GFF494 0.57 +0.4
537,599 - GFF494 0.57 +0.0
537,599 - GFF494 0.57 +0.0
537,599 - GFF494 0.57 +0.5
537,599 - GFF494 0.57 +2.0
537,599 - GFF494 0.57 -0.4
537,599 - GFF494 0.57 +0.8
537,599 - GFF494 0.57 +1.0
537,599 - GFF494 0.57 +0.3
537,753 + GFF494 0.70 +0.3
537,753 + GFF494 0.70 -0.6
537,754 - GFF494 0.70 -0.0
537,815 - GFF494 0.75 -0.2
537,815 - GFF494 0.75 -0.6
538,165 + -0.8
538,175 + -1.6
538,175 + -0.4
538,186 + +0.1
538,186 + +0.9
538,186 + +0.2
538,186 + -0.0
538,186 + -0.1
538,187 - +0.7
538,187 - -1.5
538,210 + -2.1
538,247 + -0.8
538,247 + +1.2
538,247 + -1.1
538,247 + +0.1
538,247 + -0.3
538,248 - -0.3
538,248 - -0.2
538,248 - -0.8
538,248 - +0.4
538,248 - -0.1
538,295 + -0.2
538,295 + +0.0
538,295 + -1.6
538,296 - -0.3
538,296 - -1.6
538,403 + +0.2
538,403 + -0.1
538,403 + -1.1
538,403 + +0.0
538,403 + -0.7
538,403 + -0.1
538,403 + -0.0
538,404 - -1.0
538,404 - -0.7
538,404 - -0.0
538,404 - -0.4
538,442 + GFF495 0.11 -0.4
538,443 - GFF495 0.11 -1.0
538,513 + GFF495 0.14 +0.3
538,513 + GFF495 0.14 -0.8
538,513 + GFF495 0.14 -0.4
538,513 + GFF495 0.14 -0.1
538,514 - GFF495 0.15 +0.5
538,514 - GFF495 0.15 -0.4
538,514 - GFF495 0.15 -0.7
538,514 - GFF495 0.15 -0.5
538,514 - GFF495 0.15 -0.4
538,514 - GFF495 0.15 -0.0
538,514 - GFF495 0.15 -0.1
538,514 - GFF495 0.15 -0.5
539,012 + GFF495 0.42 +0.4
539,012 + GFF495 0.42 -1.1
539,012 + GFF495 0.42 +1.3
539,099 + GFF495 0.46 +0.9
539,099 + GFF495 0.46 +0.1
539,099 + GFF495 0.46 +0.4
539,099 + GFF495 0.46 -1.1
539,099 + GFF495 0.46 +1.2
539,100 - GFF495 0.46 +0.1
539,100 - GFF495 0.46 +0.6
539,100 - GFF495 0.46 -0.4
539,100 - GFF495 0.46 +0.3
539,100 - GFF495 0.46 -0.6
539,100 - GFF495 0.46 -0.9
539,100 - GFF495 0.46 -0.7
539,100 - GFF495 0.46 -0.1

Or see this region's nucleotide sequence