Strain Fitness in Variovorax sp. SCN45 around GFF4496

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
138,966	+		GFF4494	0.71	+0.4
138,966	+		GFF4494	0.71	+1.2
138,966	+		GFF4494	0.71	+0.3
138,966	+		GFF4494	0.71	+0.4
138,967	-		GFF4494	0.71	+0.0
138,967	-		GFF4494	0.71	-0.3
138,967	-		GFF4494	0.71	+0.3
138,967	-		GFF4494	0.71	+1.7
139,151	+				-0.3
139,151	+				-0.1
139,151	+				-0.2
139,152	-				+0.4
139,152	-				-0.6
139,403	+		GFF4495	0.40	+2.1
139,403	+		GFF4495	0.40	-0.4
139,404	-		GFF4495	0.40	-1.3
139,404	-		GFF4495	0.40	-0.2
139,583	+		GFF4495	0.62	+1.0
139,583	+		GFF4495	0.62	-0.2
139,584	-		GFF4495	0.62	+0.1
139,584	-		GFF4495	0.62	-0.3
139,584	-		GFF4495	0.62	-0.3
139,584	-		GFF4495	0.62	+0.1
139,685	+		GFF4495	0.75	+0.2
139,685	+		GFF4495	0.75	+0.5
139,685	+		GFF4495	0.75	-0.3
139,685	+		GFF4495	0.75	-1.7
139,685	+		GFF4495	0.75	-0.5
139,686	-		GFF4495	0.75	-0.2
139,686	-		GFF4495	0.75	+0.6
139,686	-		GFF4495	0.75	-0.6
139,691	+		GFF4495	0.75	+0.2
139,691	+		GFF4495	0.75	+0.0
139,691	+		GFF4495	0.75	+0.3
139,691	+		GFF4495	0.75	-0.9
139,691	+		GFF4495	0.75	+1.7
139,692	-		GFF4495	0.75	-0.0
139,692	-		GFF4495	0.75	-0.5
139,853	+				+1.1
139,853	+				-1.3
139,853	+				-0.5
139,853	+				+0.4
139,853	+				+0.9
139,853	+				-1.2
139,854	-				+0.1
139,854	-				+0.5
139,854	-				+0.7
139,854	-				-0.3
139,854	-				+1.2
139,854	-				-0.9
139,856	+				+0.7
139,856	+				+0.5
139,856	+				-0.1
139,856	+				-0.3
139,856	+				+0.4
139,857	-				-0.2
139,857	-				+0.2
139,857	-				-0.2
139,857	-				-0.3
140,130	+		GFF4496	0.12	-0.7
140,130	+		GFF4496	0.12	-0.2
140,212	-		GFF4496	0.17	+0.6
140,457	+		GFF4496	0.33	-0.3
140,457	+		GFF4496	0.33	-0.2
140,458	-		GFF4496	0.33	+0.4
140,458	-		GFF4496	0.33	-0.0
140,458	-		GFF4496	0.33	+0.5
140,507	+		GFF4496	0.36	-0.2
140,508	-		GFF4496	0.36	-0.3
140,508	-		GFF4496	0.36	-1.0
140,508	-		GFF4496	0.36	+0.3
140,733	+		GFF4496	0.50	+0.4
140,863	-		GFF4496	0.58	-0.9
140,863	-		GFF4496	0.58	+0.5
140,964	+		GFF4496	0.65	+0.2
140,964	+		GFF4496	0.65	-0.6
140,964	+		GFF4496	0.65	+0.4
140,964	+		GFF4496	0.65	+0.7
140,964	+		GFF4496	0.65	+1.7
140,964	+		GFF4496	0.65	+0.8
140,964	+		GFF4496	0.65	-0.7
140,964	+		GFF4496	0.65	-0.7
140,965	-		GFF4496	0.65	+0.2
140,965	-		GFF4496	0.65	+0.4
140,965	-		GFF4496	0.65	+0.7
140,965	-		GFF4496	0.65	+0.1
140,965	-		GFF4496	0.65	+0.6
140,965	-		GFF4496	0.65	+0.6
140,965	-		GFF4496	0.65	-0.5
140,965	-		GFF4496	0.65	-0.2
140,965	-		GFF4496	0.65	-0.6
140,965	-		GFF4496	0.65	+2.0
140,965	-		GFF4496	0.65	+0.8
140,965	-		GFF4496	0.65	+0.1
140,965	-		GFF4496	0.65	-1.3
140,985	+		GFF4496	0.66	+0.5
140,985	+		GFF4496	0.66	+0.0
140,985	+		GFF4496	0.66	-0.9
140,985	+		GFF4496	0.66	-1.6
140,985	+		GFF4496	0.66	-0.3
140,986	-		GFF4496	0.66	-0.7
140,986	-		GFF4496	0.66	-0.9
141,186	+		GFF4496	0.79	+1.5
141,187	+		GFF4496	0.79	+0.1
141,187	-		GFF4496	0.79	+0.4
141,187	-		GFF4496	0.79	+0.3
141,187	-		GFF4496	0.79	-0.9
141,187	-		GFF4496	0.79	-1.2
141,187	-		GFF4496	0.79	-2.2
141,589	+		GFF4497	0.20	-0.4
141,847	+		GFF4497	0.84	-0.1
141,848	-		GFF4497	0.85	-0.0
141,848	-		GFF4497	0.85	-1.5
141,848	-		GFF4497	0.85	+0.0
142,110	+				+1.0
142,111	-				-0.0
142,197	+		GFF4498	0.14	-0.7
142,197	+		GFF4498	0.14	-0.2
142,197	+		GFF4498	0.14	-1.0
142,197	+		GFF4498	0.14	-1.3
142,198	-		GFF4498	0.14	+0.8
142,473	+		GFF4498	0.28	-0.4
142,473	+		GFF4498	0.28	-0.3
142,474	-		GFF4498	0.28	-0.5
142,474	-		GFF4498	0.28	+0.1
142,474	-		GFF4498	0.28	-0.3
142,474	-		GFF4498	0.28	-1.3
142,474	-		GFF4498	0.28	+0.7
142,474	-		GFF4498	0.28	-0.5
142,474	-		GFF4498	0.28	+1.7