Strain Fitness in Variovorax sp. SCN45 around GFF4002

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4001 and GFF4002 overlap by 4 nucleotidesGFF4002 and GFF4003 are separated by 28 nucleotidesGFF4003 and GFF4004 are separated by 9 nucleotides GFF4001 - FIG01199237: hypothetical protein, at 203,357 to 207,079 GFF4001 GFF4002 - Putative transmembrane protein, at 207,076 to 208,608 GFF4002 GFF4003 - FIGfam005179, at 208,637 to 209,467 GFF4003 GFF4004 - Homoserine kinase (EC 2.7.1.39), at 209,477 to 210,541 GFF4004 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.076 kb on + strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.077 kb on - strand, within GFF4001at 206.127 kb on - strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.156 kb on + strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.157 kb on - strand, within GFF4001at 206.459 kb on + strand, within GFF4001at 206.460 kb on - strand, within GFF4001at 206.460 kb on - strand, within GFF4001at 206.492 kb on + strand, within GFF4001at 206.492 kb on + strand, within GFF4001at 206.493 kb on - strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.555 kb on + strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.556 kb on - strand, within GFF4001at 206.771 kb on + strandat 206.772 kb on - strandat 206.772 kb on - strandat 206.772 kb on - strandat 206.772 kb on - strandat 206.999 kb on + strandat 206.999 kb on + strandat 207.206 kb on - strandat 207.206 kb on - strandat 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.235 kb on + strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.236 kb on - strand, within GFF4002at 207.250 kb on + strand, within GFF4002at 207.250 kb on + strand, within GFF4002at 207.304 kb on + strand, within GFF4002at 207.304 kb on + strand, within GFF4002at 207.304 kb on + strand, within GFF4002at 207.305 kb on - strand, within GFF4002at 207.853 kb on + strand, within GFF4002at 207.854 kb on - strand, within GFF4002at 207.854 kb on - strand, within GFF4002at 207.862 kb on + strand, within GFF4002at 207.862 kb on + strand, within GFF4002at 207.863 kb on - strand, within GFF4002at 207.863 kb on - strand, within GFF4002at 207.908 kb on + strand, within GFF4002at 207.908 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.015 kb on + strand, within GFF4002at 208.016 kb on - strand, within GFF4002at 208.016 kb on - strand, within GFF4002at 208.096 kb on + strand, within GFF4002at 208.097 kb on - strand, within GFF4002at 208.376 kb on - strand, within GFF4002at 208.376 kb on - strand, within GFF4002at 208.854 kb on + strand, within GFF4003at 208.854 kb on + strand, within GFF4003at 209.052 kb on + strand, within GFF4003at 209.052 kb on + strand, within GFF4003at 209.052 kb on + strand, within GFF4003at 209.053 kb on - strand, within GFF4003at 209.053 kb on - strand, within GFF4003at 209.112 kb on + strand, within GFF4003at 209.112 kb on + strand, within GFF4003at 209.112 kb on + strand, within GFF4003at 209.112 kb on + strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.113 kb on - strand, within GFF4003at 209.250 kb on + strand, within GFF4003at 209.250 kb on + strand, within GFF4003at 209.294 kb on + strand, within GFF4003

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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206,076 + GFF4001 0.73 -0.5
206,077 - GFF4001 0.73 +0.9
206,077 - GFF4001 0.73 -0.1
206,077 - GFF4001 0.73 -1.0
206,077 - GFF4001 0.73 +0.3
206,077 - GFF4001 0.73 -1.7
206,127 - GFF4001 0.74 -0.7
206,156 + GFF4001 0.75 +1.3
206,156 + GFF4001 0.75 -0.5
206,156 + GFF4001 0.75 -1.0
206,156 + GFF4001 0.75 +0.8
206,156 + GFF4001 0.75 -0.5
206,156 + GFF4001 0.75 -0.9
206,156 + GFF4001 0.75 +0.2
206,156 + GFF4001 0.75 +0.8
206,157 - GFF4001 0.75 -0.3
206,157 - GFF4001 0.75 -2.0
206,157 - GFF4001 0.75 -1.8
206,157 - GFF4001 0.75 +0.1
206,157 - GFF4001 0.75 +0.4
206,157 - GFF4001 0.75 +2.7
206,157 - GFF4001 0.75 -0.1
206,157 - GFF4001 0.75 +0.2
206,157 - GFF4001 0.75 +1.8
206,157 - GFF4001 0.75 -1.0
206,459 + GFF4001 0.83 +0.1
206,460 - GFF4001 0.83 -0.3
206,460 - GFF4001 0.83 +0.5
206,492 + GFF4001 0.84 -0.2
206,492 + GFF4001 0.84 -0.3
206,493 - GFF4001 0.84 -1.4
206,555 + GFF4001 0.86 -0.4
206,555 + GFF4001 0.86 -0.2
206,555 + GFF4001 0.86 -0.1
206,555 + GFF4001 0.86 +0.1
206,555 + GFF4001 0.86 -0.6
206,555 + GFF4001 0.86 -0.4
206,555 + GFF4001 0.86 +2.8
206,555 + GFF4001 0.86 -1.2
206,555 + GFF4001 0.86 -0.4
206,555 + GFF4001 0.86 +0.2
206,556 - GFF4001 0.86 +0.1
206,556 - GFF4001 0.86 -1.8
206,556 - GFF4001 0.86 +0.1
206,556 - GFF4001 0.86 +0.8
206,556 - GFF4001 0.86 +0.9
206,771 + +0.5
206,772 - +0.1
206,772 - -1.0
206,772 - -0.5
206,772 - -0.2
206,999 + +0.8
206,999 + +0.0
207,206 - -0.4
207,206 - -0.8
207,235 + GFF4002 0.10 -0.2
207,235 + GFF4002 0.10 +0.4
207,235 + GFF4002 0.10 +0.7
207,235 + GFF4002 0.10 -0.5
207,235 + GFF4002 0.10 +0.8
207,236 - GFF4002 0.10 +1.3
207,236 - GFF4002 0.10 +0.3
207,236 - GFF4002 0.10 -0.3
207,236 - GFF4002 0.10 +0.1
207,236 - GFF4002 0.10 -0.2
207,236 - GFF4002 0.10 +1.5
207,236 - GFF4002 0.10 +0.3
207,250 + GFF4002 0.11 +0.5
207,250 + GFF4002 0.11 +0.2
207,304 + GFF4002 0.15 +0.2
207,304 + GFF4002 0.15 +0.9
207,304 + GFF4002 0.15 -0.3
207,305 - GFF4002 0.15 -0.1
207,853 + GFF4002 0.51 -0.5
207,854 - GFF4002 0.51 +0.0
207,854 - GFF4002 0.51 -1.2
207,862 + GFF4002 0.51 +0.3
207,862 + GFF4002 0.51 -0.5
207,863 - GFF4002 0.51 +0.5
207,863 - GFF4002 0.51 -0.8
207,908 + GFF4002 0.54 +0.4
207,908 + GFF4002 0.54 -0.7
208,015 + GFF4002 0.61 -0.1
208,015 + GFF4002 0.61 -0.3
208,015 + GFF4002 0.61 -0.8
208,015 + GFF4002 0.61 -1.5
208,016 - GFF4002 0.61 +2.1
208,016 - GFF4002 0.61 +0.2
208,096 + GFF4002 0.67 +0.5
208,097 - GFF4002 0.67 +0.1
208,376 - GFF4002 0.85 +0.1
208,376 - GFF4002 0.85 -0.1
208,854 + GFF4003 0.26 +0.2
208,854 + GFF4003 0.26 +0.3
209,052 + GFF4003 0.50 +0.1
209,052 + GFF4003 0.50 -0.4
209,052 + GFF4003 0.50 +0.2
209,053 - GFF4003 0.50 -0.2
209,053 - GFF4003 0.50 -0.2
209,112 + GFF4003 0.57 +0.0
209,112 + GFF4003 0.57 -0.1
209,112 + GFF4003 0.57 +0.1
209,112 + GFF4003 0.57 -0.7
209,113 - GFF4003 0.57 -0.6
209,113 - GFF4003 0.57 +1.9
209,113 - GFF4003 0.57 -1.5
209,113 - GFF4003 0.57 -1.1
209,113 - GFF4003 0.57 -0.3
209,113 - GFF4003 0.57 +0.8
209,113 - GFF4003 0.57 -0.3
209,113 - GFF4003 0.57 +0.9
209,113 - GFF4003 0.57 +0.7
209,250 + GFF4003 0.74 +0.3
209,250 + GFF4003 0.74 -0.3
209,294 + GFF4003 0.79 +0.7

Or see this region's nucleotide sequence