Strain Fitness in Variovorax sp. SCN45 around GFF3986

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
189,702	-		GFF3985	0.37	+0.3
189,801	-		GFF3985	0.44	-0.4
189,905	+		GFF3985	0.50	+0.1
189,905	+		GFF3985	0.50	-1.1
189,906	-		GFF3985	0.50	+0.0
189,906	-		GFF3985	0.50	-0.7
189,906	-		GFF3985	0.50	-0.5
190,226	+		GFF3985	0.70	+0.0
190,226	+		GFF3985	0.70	+1.0
190,227	-		GFF3985	0.70	-0.4
190,227	-		GFF3985	0.70	-0.8
190,448	+		GFF3985	0.84	-1.0
190,562	+				-0.6
190,694	+				-0.3
190,694	+				+1.0
190,695	-				+0.2
190,695	-				+1.8
190,695	-				+1.1
191,097	-		GFF3986	0.53	-0.0
191,163	+		GFF3986	0.62	+1.0
191,164	-		GFF3986	0.62	+0.7
191,164	-		GFF3986	0.62	-0.0
191,373	+				-0.3
191,504	+				-0.5
191,505	-				-0.3
191,709	+		GFF3987	0.27	-0.1
191,709	+		GFF3987	0.27	-1.1
191,710	-		GFF3987	0.27	-0.5
191,917	+		GFF3987	0.54	+1.5
191,946	-		GFF3987	0.57	-0.4
191,946	-		GFF3987	0.57	-0.8
191,946	-		GFF3987	0.57	+0.0
191,946	-		GFF3987	0.57	+0.6
191,946	-		GFF3987	0.57	-2.2
191,951	+		GFF3987	0.58	-1.7
191,951	+		GFF3987	0.58	+0.6
191,952	-		GFF3987	0.58	-2.5
191,952	-		GFF3987	0.58	+0.4
191,952	-		GFF3987	0.58	-0.2
191,952	-		GFF3987	0.58	+0.5
191,952	-		GFF3987	0.58	+0.7
191,952	-		GFF3987	0.58	+0.3
191,963	+		GFF3987	0.59	+0.3
191,964	-		GFF3987	0.60	-0.2
192,059	+		GFF3987	0.72	-1.2
192,061	+		GFF3987	0.72	+0.5
192,062	-		GFF3987	0.72	+0.3
192,393	+		GFF3988	0.22	-0.7
192,445	-		GFF3988	0.32	+0.1