Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3797 and GFF3798 are separated by 69 nucleotides GFF3798 and GFF3799 are separated by 82 nucleotides GFF3799 and GFF3800 are separated by 79 nucleotides
GFF3797 - Ammonia monooxygenase, at 297,412 to 298,515
GFF3797
GFF3798 - FIG00932573: hypothetical protein, at 298,585 to 298,896
GFF3798
GFF3799 - Putative PROLIN-rich signal peptide protein, at 298,979 to 300,211
GFF3799
GFF3800 - Fumarylacetoacetate hydrolase family protein, at 300,291 to 301,388
GFF3800
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 297.986 kb on + strand, within GFF3797 at 297.987 kb on - strand, within GFF3797 at 298.501 kb on + strand at 298.501 kb on + strand at 298.501 kb on + strand at 298.501 kb on + strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.502 kb on - strand at 298.622 kb on + strand, within GFF3798 at 298.622 kb on + strand, within GFF3798 at 298.623 kb on - strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.721 kb on + strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.722 kb on - strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.850 kb on + strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.851 kb on - strand, within GFF3798 at 298.875 kb on + strand at 298.875 kb on + strand at 298.876 kb on - strand at 298.896 kb on + strand at 298.896 kb on + strand at 298.897 kb on - strand at 298.897 kb on - strand at 298.897 kb on - strand at 298.897 kb on - strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.903 kb on + strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.904 kb on - strand at 298.907 kb on + strand at 298.907 kb on + strand at 298.907 kb on + strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.908 kb on - strand at 298.950 kb on + strand at 298.950 kb on + strand at 298.950 kb on + strand at 298.951 kb on - strand at 298.951 kb on - strand at 298.951 kb on - strand at 298.951 kb on - strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.070 kb on + strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.071 kb on - strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.076 kb on + strand at 299.077 kb on - strand at 299.077 kb on - strand at 299.077 kb on - strand at 299.077 kb on - strand at 299.152 kb on - strand, within GFF3799 at 299.260 kb on - strand, within GFF3799 at 299.291 kb on + strand, within GFF3799 at 299.291 kb on + strand, within GFF3799 at 299.292 kb on - strand, within GFF3799 at 299.424 kb on + strand, within GFF3799 at 299.425 kb on - strand, within GFF3799 at 299.521 kb on - strand, within GFF3799 at 299.521 kb on - strand, within GFF3799 at 299.521 kb on - strand, within GFF3799 at 299.626 kb on + strand, within GFF3799 at 299.626 kb on + strand, within GFF3799 at 299.627 kb on - strand, within GFF3799 at 299.627 kb on - strand, within GFF3799 at 300.226 kb on + strand at 300.226 kb on + strand at 300.226 kb on + strand at 300.226 kb on + strand at 300.226 kb on + strand at 300.227 kb on - strand at 300.227 kb on - strand at 300.251 kb on + strand at 300.251 kb on + strand at 300.251 kb on + strand at 300.251 kb on + strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.252 kb on - strand at 300.282 kb on + strand at 300.282 kb on + strand at 300.282 kb on + strand at 300.283 kb on - strand at 300.283 kb on - strand at 300.369 kb on + strand at 300.369 kb on + strand at 300.369 kb on + strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.370 kb on - strand at 300.447 kb on + strand, within GFF3800 at 300.447 kb on + strand, within GFF3800 at 300.448 kb on - strand, within GFF3800 at 300.448 kb on - strand, within GFF3800 at 300.448 kb on - strand, within GFF3800 at 300.528 kb on + strand, within GFF3800 at 300.528 kb on + strand, within GFF3800 at 300.529 kb on - strand, within GFF3800 at 300.552 kb on + strand, within GFF3800 at 300.552 kb on + strand, within GFF3800 at 300.553 kb on - strand, within GFF3800 at 300.612 kb on + strand, within GFF3800 at 300.612 kb on + strand, within GFF3800 at 300.612 kb on + strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.613 kb on - strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.630 kb on + strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 300.631 kb on - strand, within GFF3800 at 301.138 kb on - strand, within GFF3800 at 301.138 kb on - strand, within GFF3800 at 301.138 kb on - strand, within GFF3800 at 301.191 kb on + strand, within GFF3800 at 301.191 kb on + strand, within GFF3800 at 301.191 kb on + strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.192 kb on - strand, within GFF3800 at 301.192 kb on - strand, within GFF3800
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 297,986 + GFF3797 0.52 -0.9 297,987 - GFF3797 0.52 -0.2 298,501 + -1.0 298,501 + +0.0 298,501 + +0.0 298,501 + -0.1 298,502 - -0.3 298,502 - +0.2 298,502 - +0.2 298,502 - -0.3 298,502 - -0.2 298,502 - +0.1 298,622 + GFF3798 0.12 -0.3 298,622 + GFF3798 0.12 +0.3 298,623 - GFF3798 0.12 +0.1 298,721 + GFF3798 0.44 +0.3 298,721 + GFF3798 0.44 -0.1 298,721 + GFF3798 0.44 +0.4 298,721 + GFF3798 0.44 +0.3 298,721 + GFF3798 0.44 -0.1 298,722 - GFF3798 0.44 -1.5 298,722 - GFF3798 0.44 +0.2 298,722 - GFF3798 0.44 +0.4 298,722 - GFF3798 0.44 -0.3 298,722 - GFF3798 0.44 -1.1 298,722 - GFF3798 0.44 +1.4 298,722 - GFF3798 0.44 +0.6 298,850 + GFF3798 0.85 +1.0 298,850 + GFF3798 0.85 +0.0 298,850 + GFF3798 0.85 -0.2 298,850 + GFF3798 0.85 +0.4 298,850 + GFF3798 0.85 -0.0 298,850 + GFF3798 0.85 +0.2 298,850 + GFF3798 0.85 +0.5 298,850 + GFF3798 0.85 -0.4 298,850 + GFF3798 0.85 +0.5 298,850 + GFF3798 0.85 -1.0 298,850 + GFF3798 0.85 +0.6 298,851 - GFF3798 0.85 -0.4 298,851 - GFF3798 0.85 -0.1 298,851 - GFF3798 0.85 +0.1 298,851 - GFF3798 0.85 +0.0 298,851 - GFF3798 0.85 +0.7 298,851 - GFF3798 0.85 +0.2 298,851 - GFF3798 0.85 +1.3 298,851 - GFF3798 0.85 -0.0 298,851 - GFF3798 0.85 -0.1 298,851 - GFF3798 0.85 +0.2 298,851 - GFF3798 0.85 +1.8 298,851 - GFF3798 0.85 -0.1 298,851 - GFF3798 0.85 +0.8 298,875 + -0.6 298,875 + -0.3 298,876 - -1.1 298,896 + -0.3 298,896 + +0.0 298,897 - +0.1 298,897 - +1.0 298,897 - +0.1 298,897 - +0.4 298,903 + +1.1 298,903 + +1.3 298,903 + +0.3 298,903 + +1.8 298,903 + -1.6 298,903 + +1.3 298,903 + -0.6 298,903 + -1.1 298,904 - -1.7 298,904 - +0.6 298,904 - -0.2 298,904 - -1.2 298,904 - -0.1 298,904 - -0.6 298,904 - -0.2 298,907 + +0.5 298,907 + -0.8 298,907 + +0.1 298,908 - -0.4 298,908 - -0.7 298,908 - -1.9 298,908 - -0.8 298,908 - +0.7 298,908 - -0.6 298,908 - -1.2 298,950 + +1.0 298,950 + +0.2 298,950 + -0.1 298,951 - +0.2 298,951 - -1.1 298,951 - -0.0 298,951 - -0.8 299,070 + +0.6 299,070 + -0.0 299,070 + -0.3 299,070 + -1.1 299,070 + -0.2 299,070 + -0.6 299,070 + -0.6 299,071 - +0.1 299,071 - -0.1 299,071 - -0.5 299,071 - -0.1 299,071 - -0.4 299,071 - -0.6 299,076 + -0.2 299,076 + -0.6 299,076 + +1.4 299,076 + -0.4 299,076 + +0.5 299,076 + -3.1 299,076 + -0.8 299,077 - +0.2 299,077 - +0.4 299,077 - -0.5 299,077 - +0.6 299,152 - GFF3799 0.14 +1.0 299,260 - GFF3799 0.23 -0.1 299,291 + GFF3799 0.25 +0.0 299,291 + GFF3799 0.25 +2.6 299,292 - GFF3799 0.25 -0.2 299,424 + GFF3799 0.36 -0.5 299,425 - GFF3799 0.36 +0.5 299,521 - GFF3799 0.44 -0.3 299,521 - GFF3799 0.44 -1.0 299,521 - GFF3799 0.44 -1.0 299,626 + GFF3799 0.52 +1.2 299,626 + GFF3799 0.52 -0.9 299,627 - GFF3799 0.53 +1.4 299,627 - GFF3799 0.53 -0.2 300,226 + +2.8 300,226 + +0.6 300,226 + -0.2 300,226 + +0.4 300,226 + +3.8 300,227 - +0.8 300,227 - +0.2 300,251 + -0.1 300,251 + +0.4 300,251 + +0.1 300,251 + +0.2 300,252 - -0.1 300,252 - -0.2 300,252 - +0.1 300,252 - -1.1 300,252 - -0.3 300,252 - -0.6 300,252 - -0.2 300,252 - -0.2 300,252 - +0.7 300,252 - -0.2 300,282 + +0.3 300,282 + -1.1 300,282 + -1.0 300,283 - +1.1 300,283 - -0.8 300,369 + +0.8 300,369 + +0.3 300,369 + -0.4 300,370 - +0.2 300,370 - +0.1 300,370 - -0.6 300,370 - -0.6 300,370 - -0.6 300,447 + GFF3800 0.14 -0.3 300,447 + GFF3800 0.14 +0.2 300,448 - GFF3800 0.14 -0.6 300,448 - GFF3800 0.14 -0.9 300,448 - GFF3800 0.14 -0.9 300,528 + GFF3800 0.22 +0.7 300,528 + GFF3800 0.22 +0.3 300,529 - GFF3800 0.22 +0.2 300,552 + GFF3800 0.24 +1.0 300,552 + GFF3800 0.24 -0.2 300,553 - GFF3800 0.24 +0.0 300,612 + GFF3800 0.29 -0.5 300,612 + GFF3800 0.29 -0.2 300,612 + GFF3800 0.29 -0.3 300,613 - GFF3800 0.29 -0.4 300,613 - GFF3800 0.29 -0.1 300,613 - GFF3800 0.29 +0.7 300,613 - GFF3800 0.29 +0.9 300,630 + GFF3800 0.31 +0.0 300,630 + GFF3800 0.31 +1.1 300,630 + GFF3800 0.31 -1.2 300,630 + GFF3800 0.31 +0.8 300,630 + GFF3800 0.31 +0.2 300,630 + GFF3800 0.31 +1.0 300,630 + GFF3800 0.31 -1.2 300,630 + GFF3800 0.31 -1.5 300,630 + GFF3800 0.31 +0.1 300,630 + GFF3800 0.31 +0.4 300,631 - GFF3800 0.31 +0.1 300,631 - GFF3800 0.31 -0.6 300,631 - GFF3800 0.31 -0.8 300,631 - GFF3800 0.31 -0.3 300,631 - GFF3800 0.31 +0.3 300,631 - GFF3800 0.31 -0.1 300,631 - GFF3800 0.31 +0.1 301,138 - GFF3800 0.77 +0.3 301,138 - GFF3800 0.77 -0.8 301,138 - GFF3800 0.77 -0.1 301,191 + GFF3800 0.82 -1.6 301,191 + GFF3800 0.82 -0.7 301,191 + GFF3800 0.82 -0.8 301,192 - GFF3800 0.82 -0.2 301,192 - GFF3800 0.82 +0.3 301,192 - GFF3800 0.82 +1.2 301,192 - GFF3800 0.82 -0.2
Or see this region's nucleotide sequence