Strain Fitness in Variovorax sp. SCN45 around GFF3541

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3539 and GFF3540 are separated by 131 nucleotidesGFF3540 and GFF3541 overlap by 1 nucleotidesGFF3541 and GFF3542 overlap by 4 nucleotidesGFF3542 and GFF3543 are separated by 5 nucleotides GFF3539 - Probable ALANIN-rich signal peptide protein, at 45,224 to 45,721 GFF3539 GFF3540 - hypothetical protein, at 45,853 to 46,515 GFF3540 GFF3541 - hypothetical protein, at 46,515 to 47,342 GFF3541 GFF3542 - hypothetical protein, at 47,339 to 47,851 GFF3542 GFF3543 - no description, at 47,857 to 48,453 GFF3543 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.594 kb on + strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.595 kb on - strand, within GFF3539at 45.764 kb on + strandat 45.764 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.823 kb on + strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.824 kb on - strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.890 kb on + strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.891 kb on - strandat 45.923 kb on + strand, within GFF3540at 45.923 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.260 kb on + strand, within GFF3540at 46.585 kb on + strandat 46.586 kb on - strandat 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.774 kb on + strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.775 kb on - strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.855 kb on + strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.856 kb on - strand, within GFF3541at 46.927 kb on + strand, within GFF3541at 47.102 kb on - strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.125 kb on + strand, within GFF3541at 47.126 kb on - strand, within GFF3541at 47.126 kb on - strand, within GFF3541at 47.354 kb on + strandat 47.354 kb on + strandat 47.354 kb on + strandat 47.355 kb on - strandat 47.355 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.365 kb on - strandat 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.592 kb on + strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.593 kb on - strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.595 kb on + strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.596 kb on - strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.619 kb on + strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.620 kb on - strand, within GFF3542at 47.894 kb on + strandat 47.894 kb on + strandat 47.894 kb on + strandat 47.894 kb on + strandat 47.895 kb on - strandat 47.895 kb on - strandat 47.909 kb on + strandat 47.909 kb on + strandat 47.910 kb on - strandat 47.927 kb on + strand, within GFF3543at 47.927 kb on + strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 47.928 kb on - strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.049 kb on + strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.050 kb on - strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.331 kb on + strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.332 kb on - strand, within GFF3543at 48.332 kb on - strand, within GFF3543

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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45,594 + GFF3539 0.74 +1.4
45,594 + GFF3539 0.74 +0.0
45,594 + GFF3539 0.74 +0.0
45,594 + GFF3539 0.74 +0.3
45,594 + GFF3539 0.74 -0.1
45,594 + GFF3539 0.74 -0.3
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 +0.5
45,594 + GFF3539 0.74 -0.4
45,594 + GFF3539 0.74 -0.2
45,594 + GFF3539 0.74 +0.3
45,595 - GFF3539 0.74 +0.1
45,595 - GFF3539 0.74 -0.5
45,595 - GFF3539 0.74 -0.9
45,595 - GFF3539 0.74 -0.4
45,595 - GFF3539 0.74 -0.0
45,595 - GFF3539 0.74 -0.8
45,595 - GFF3539 0.74 +0.1
45,595 - GFF3539 0.74 +0.0
45,595 - GFF3539 0.74 -0.2
45,595 - GFF3539 0.74 -1.0
45,764 + -0.3
45,764 + -0.2
45,823 + +0.2
45,823 + +0.2
45,823 + +0.1
45,823 + +0.3
45,824 - +0.3
45,824 - +1.2
45,824 - +0.8
45,890 + +0.8
45,890 + -0.1
45,890 + -0.4
45,891 - -1.0
45,891 - -0.8
45,891 - -0.7
45,891 - -0.9
45,923 + GFF3540 0.11 +0.4
45,923 + GFF3540 0.11 -1.5
46,260 + GFF3540 0.61 -0.5
46,260 + GFF3540 0.61 +0.8
46,260 + GFF3540 0.61 -0.7
46,585 + +0.9
46,586 - -1.7
46,774 + GFF3541 0.31 +0.1
46,774 + GFF3541 0.31 -0.1
46,774 + GFF3541 0.31 -0.5
46,774 + GFF3541 0.31 -0.0
46,774 + GFF3541 0.31 +0.2
46,774 + GFF3541 0.31 +1.0
46,775 - GFF3541 0.31 -0.6
46,775 - GFF3541 0.31 +0.9
46,775 - GFF3541 0.31 -0.6
46,775 - GFF3541 0.31 +1.2
46,775 - GFF3541 0.31 -0.8
46,775 - GFF3541 0.31 +1.4
46,775 - GFF3541 0.31 +0.2
46,855 + GFF3541 0.41 -0.3
46,855 + GFF3541 0.41 +0.1
46,855 + GFF3541 0.41 -0.2
46,855 + GFF3541 0.41 +0.8
46,855 + GFF3541 0.41 -1.6
46,855 + GFF3541 0.41 -0.8
46,855 + GFF3541 0.41 +0.2
46,855 + GFF3541 0.41 +1.0
46,855 + GFF3541 0.41 -0.0
46,855 + GFF3541 0.41 -1.0
46,855 + GFF3541 0.41 -0.6
46,855 + GFF3541 0.41 -1.0
46,855 + GFF3541 0.41 -0.6
46,855 + GFF3541 0.41 +0.1
46,856 - GFF3541 0.41 +0.8
46,856 - GFF3541 0.41 -0.3
46,856 - GFF3541 0.41 -0.4
46,856 - GFF3541 0.41 -0.4
46,856 - GFF3541 0.41 -0.2
46,856 - GFF3541 0.41 -0.7
46,856 - GFF3541 0.41 -0.0
46,856 - GFF3541 0.41 +0.0
46,856 - GFF3541 0.41 -0.2
46,927 + GFF3541 0.50 -0.1
47,102 - GFF3541 0.71 -0.5
47,125 + GFF3541 0.74 +0.4
47,125 + GFF3541 0.74 -0.0
47,125 + GFF3541 0.74 +0.4
47,125 + GFF3541 0.74 +0.8
47,126 - GFF3541 0.74 +0.6
47,126 - GFF3541 0.74 -0.4
47,354 + -1.5
47,354 + +0.6
47,354 + -0.3
47,355 - +0.2
47,355 - -0.3
47,365 - -1.0
47,365 - +0.0
47,365 - -1.1
47,592 + GFF3542 0.49 -0.5
47,592 + GFF3542 0.49 +0.1
47,592 + GFF3542 0.49 -1.1
47,592 + GFF3542 0.49 -0.3
47,592 + GFF3542 0.49 +0.8
47,592 + GFF3542 0.49 -0.8
47,592 + GFF3542 0.49 +0.0
47,592 + GFF3542 0.49 +0.1
47,592 + GFF3542 0.49 -0.2
47,592 + GFF3542 0.49 +1.8
47,592 + GFF3542 0.49 -0.2
47,592 + GFF3542 0.49 +0.6
47,592 + GFF3542 0.49 -0.5
47,593 - GFF3542 0.50 -0.0
47,593 - GFF3542 0.50 -0.6
47,593 - GFF3542 0.50 -0.8
47,593 - GFF3542 0.50 -0.1
47,593 - GFF3542 0.50 -1.0
47,593 - GFF3542 0.50 +0.6
47,595 + GFF3542 0.50 -0.6
47,595 + GFF3542 0.50 +0.2
47,595 + GFF3542 0.50 +0.5
47,595 + GFF3542 0.50 +0.2
47,595 + GFF3542 0.50 +0.2
47,595 + GFF3542 0.50 +0.2
47,595 + GFF3542 0.50 +0.4
47,595 + GFF3542 0.50 +0.7
47,595 + GFF3542 0.50 -0.9
47,596 - GFF3542 0.50 -0.8
47,596 - GFF3542 0.50 -0.1
47,596 - GFF3542 0.50 -0.1
47,596 - GFF3542 0.50 -0.1
47,596 - GFF3542 0.50 -0.3
47,596 - GFF3542 0.50 -0.2
47,596 - GFF3542 0.50 +0.2
47,596 - GFF3542 0.50 +0.2
47,596 - GFF3542 0.50 +0.1
47,619 + GFF3542 0.55 -2.3
47,619 + GFF3542 0.55 -0.4
47,619 + GFF3542 0.55 +0.1
47,619 + GFF3542 0.55 -0.3
47,619 + GFF3542 0.55 -1.3
47,620 - GFF3542 0.55 -0.9
47,620 - GFF3542 0.55 -0.8
47,620 - GFF3542 0.55 -0.0
47,894 + +0.4
47,894 + -0.2
47,894 + -0.2
47,894 + -0.4
47,895 - -0.7
47,895 - +1.6
47,909 + +0.1
47,909 + +0.7
47,910 - +0.5
47,927 + GFF3543 0.12 -0.4
47,927 + GFF3543 0.12 -0.0
47,928 - GFF3543 0.12 +0.4
47,928 - GFF3543 0.12 +1.0
47,928 - GFF3543 0.12 -1.0
48,049 + GFF3543 0.32 -0.6
48,049 + GFF3543 0.32 -0.9
48,049 + GFF3543 0.32 -0.6
48,049 + GFF3543 0.32 +0.4
48,049 + GFF3543 0.32 -0.1
48,049 + GFF3543 0.32 -1.1
48,049 + GFF3543 0.32 +0.8
48,049 + GFF3543 0.32 +0.7
48,050 - GFF3543 0.32 -0.9
48,050 - GFF3543 0.32 +0.3
48,050 - GFF3543 0.32 -1.4
48,050 - GFF3543 0.32 -0.7
48,050 - GFF3543 0.32 -0.2
48,050 - GFF3543 0.32 -0.7
48,050 - GFF3543 0.32 +0.1
48,050 - GFF3543 0.32 -0.4
48,050 - GFF3543 0.32 -0.1
48,050 - GFF3543 0.32 -0.3
48,331 + GFF3543 0.79 -0.2
48,331 + GFF3543 0.79 +0.4
48,331 + GFF3543 0.79 -0.5
48,331 + GFF3543 0.79 +0.3
48,332 - GFF3543 0.80 -1.1
48,332 - GFF3543 0.80 -0.1
48,332 - GFF3543 0.80 +0.2

Or see this region's nucleotide sequence