Strain Fitness in Variovorax sp. SCN45 around GFF3530

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3529 and GFF3530 are separated by 83 nucleotidesGFF3530 and GFF3531 overlap by 34 nucleotides GFF3529 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 35,334 to 36,413 GFF3529 GFF3530 - Pseudouridine synthase, at 36,497 to 37,330 GFF3530 GFF3531 - hypothetical protein, at 37,297 to 38,418 GFF3531 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 35.770 kb on + strand, within GFF3529at 35.770 kb on + strand, within GFF3529at 35.770 kb on + strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.797 kb on + strand, within GFF3529at 35.803 kb on + strand, within GFF3529at 35.803 kb on + strand, within GFF3529at 35.804 kb on - strand, within GFF3529at 35.804 kb on - strand, within GFF3529at 35.815 kb on + strand, within GFF3529at 35.816 kb on - strand, within GFF3529at 35.854 kb on + strand, within GFF3529at 35.855 kb on - strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.948 kb on - strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.029 kb on - strand, within GFF3529at 36.029 kb on - strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.155 kb on - strand, within GFF3529at 36.382 kb on + strandat 36.382 kb on + strandat 36.383 kb on - strandat 36.383 kb on - strandat 36.383 kb on - strandat 36.388 kb on + strandat 36.388 kb on + strandat 36.389 kb on - strandat 36.389 kb on - strandat 36.464 kb on - strandat 36.965 kb on + strand, within GFF3530at 36.965 kb on + strand, within GFF3530at 36.965 kb on + strand, within GFF3530at 36.966 kb on - strand, within GFF3530at 36.966 kb on - strand, within GFF3530at 36.983 kb on + strand, within GFF3530at 36.983 kb on + strand, within GFF3530at 36.984 kb on - strand, within GFF3530at 37.453 kb on + strand, within GFF3531at 37.453 kb on + strand, within GFF3531at 37.453 kb on + strand, within GFF3531at 37.453 kb on + strand, within GFF3531at 37.454 kb on - strand, within GFF3531at 37.931 kb on - strand, within GFF3531at 37.931 kb on - strand, within GFF3531

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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35,770 + GFF3529 0.40 -2.2
35,770 + GFF3529 0.40 -0.5
35,770 + GFF3529 0.40 -0.6
35,771 - GFF3529 0.40 -0.9
35,771 - GFF3529 0.40 -0.0
35,771 - GFF3529 0.40 -0.2
35,771 - GFF3529 0.40 -0.9
35,771 - GFF3529 0.40 -2.3
35,797 + GFF3529 0.43 +0.8
35,803 + GFF3529 0.43 -2.0
35,803 + GFF3529 0.43 -2.2
35,804 - GFF3529 0.44 -1.8
35,804 - GFF3529 0.44 -0.1
35,815 + GFF3529 0.45 -0.4
35,816 - GFF3529 0.45 -0.6
35,854 + GFF3529 0.48 -0.7
35,855 - GFF3529 0.48 +1.8
35,947 + GFF3529 0.57 -0.7
35,947 + GFF3529 0.57 +0.0
35,947 + GFF3529 0.57 -0.7
35,947 + GFF3529 0.57 -0.4
35,948 - GFF3529 0.57 +0.5
36,028 + GFF3529 0.64 -0.4
36,028 + GFF3529 0.64 -0.5
36,028 + GFF3529 0.64 -0.6
36,029 - GFF3529 0.64 -1.9
36,029 - GFF3529 0.64 -1.2
36,031 + GFF3529 0.65 +0.4
36,031 + GFF3529 0.65 -1.1
36,031 + GFF3529 0.65 -0.7
36,031 + GFF3529 0.65 -0.3
36,032 - GFF3529 0.65 -0.9
36,032 - GFF3529 0.65 +1.8
36,032 - GFF3529 0.65 -1.7
36,032 - GFF3529 0.65 -1.4
36,032 - GFF3529 0.65 -0.2
36,154 + GFF3529 0.76 +0.5
36,154 + GFF3529 0.76 -0.0
36,154 + GFF3529 0.76 -2.0
36,155 - GFF3529 0.76 +0.4
36,382 + -1.6
36,382 + -0.7
36,383 - +0.2
36,383 - +0.4
36,383 - -1.0
36,388 + -0.6
36,388 + -0.0
36,389 - -0.4
36,389 - +1.1
36,464 - -0.0
36,965 + GFF3530 0.56 +0.1
36,965 + GFF3530 0.56 +0.2
36,965 + GFF3530 0.56 +0.9
36,966 - GFF3530 0.56 +0.2
36,966 - GFF3530 0.56 -0.5
36,983 + GFF3530 0.58 +0.3
36,983 + GFF3530 0.58 -0.2
36,984 - GFF3530 0.58 -0.1
37,453 + GFF3531 0.14 -0.2
37,453 + GFF3531 0.14 -1.1
37,453 + GFF3531 0.14 +0.8
37,453 + GFF3531 0.14 -0.7
37,454 - GFF3531 0.14 -0.5
37,931 - GFF3531 0.57 +0.5
37,931 - GFF3531 0.57 +0.5

Or see this region's nucleotide sequence