Strain Fitness in Variovorax sp. SCN45 around GFF3497

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3496 and GFF3497 are separated by 117 nucleotidesGFF3497 and GFF3498 overlap by 4 nucleotidesGFF3498 and GFF3499 are separated by 24 nucleotides GFF3496 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,052 to 2,974 GFF3496 GFF3497 - Transcriptional regulator, Crp/Fnr family, at 3,092 to 3,871 GFF3497 GFF3498 - hypothetical protein, at 3,868 to 4,335 GFF3498 GFF3499 - Toxin HigB / Protein kinase domain of HipA, at 4,360 to 5,580 GFF3499 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 2.178 kb on + strand, within GFF3496at 2.178 kb on + strand, within GFF3496at 2.179 kb on - strand, within GFF3496at 2.179 kb on - strand, within GFF3496at 2.181 kb on + strand, within GFF3496at 2.310 kb on + strand, within GFF3496at 2.311 kb on - strand, within GFF3496at 2.311 kb on - strand, within GFF3496at 2.430 kb on + strand, within GFF3496at 2.431 kb on - strand, within GFF3496at 2.481 kb on + strand, within GFF3496at 2.481 kb on + strand, within GFF3496at 2.481 kb on + strand, within GFF3496at 2.481 kb on + strand, within GFF3496at 2.481 kb on + strand, within GFF3496at 2.482 kb on - strand, within GFF3496at 2.482 kb on - strand, within GFF3496at 2.482 kb on - strand, within GFF3496at 2.485 kb on - strand, within GFF3496at 2.535 kb on + strand, within GFF3496at 2.535 kb on + strand, within GFF3496at 2.536 kb on - strand, within GFF3496at 2.536 kb on - strand, within GFF3496at 2.560 kb on - strand, within GFF3496at 2.560 kb on - strand, within GFF3496at 2.586 kb on + strand, within GFF3496at 2.586 kb on + strand, within GFF3496at 2.587 kb on - strand, within GFF3496at 2.736 kb on + strand, within GFF3496at 2.736 kb on + strand, within GFF3496at 2.787 kb on + strandat 2.787 kb on + strandat 2.787 kb on + strandat 2.787 kb on + strandat 2.788 kb on - strandat 2.788 kb on - strandat 2.788 kb on - strandat 2.788 kb on - strandat 2.788 kb on - strandat 2.788 kb on - strandat 2.788 kb on - strandat 3.021 kb on + strandat 3.021 kb on + strandat 3.021 kb on + strandat 3.021 kb on + strandat 3.021 kb on + strandat 3.022 kb on - strandat 3.022 kb on - strandat 3.022 kb on - strandat 3.072 kb on + strandat 3.073 kb on + strandat 3.073 kb on + strandat 3.073 kb on + strandat 3.073 kb on + strandat 3.073 kb on + strandat 3.073 kb on + strandat 3.074 kb on - strandat 3.074 kb on - strandat 3.074 kb on - strandat 3.074 kb on - strandat 3.296 kb on + strand, within GFF3497at 3.296 kb on + strand, within GFF3497at 3.296 kb on + strand, within GFF3497at 3.296 kb on + strand, within GFF3497at 3.297 kb on - strand, within GFF3497at 3.297 kb on - strand, within GFF3497at 3.297 kb on - strand, within GFF3497at 3.297 kb on - strand, within GFF3497at 3.297 kb on - strand, within GFF3497at 3.297 kb on - strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.365 kb on + strand, within GFF3497at 3.366 kb on - strand, within GFF3497at 3.366 kb on - strand, within GFF3497at 3.366 kb on - strand, within GFF3497at 3.431 kb on + strand, within GFF3497at 3.432 kb on - strand, within GFF3497at 3.432 kb on - strand, within GFF3497at 3.647 kb on + strand, within GFF3497at 3.647 kb on + strand, within GFF3497at 3.647 kb on + strand, within GFF3497at 3.695 kb on + strand, within GFF3497at 3.695 kb on + strand, within GFF3497at 3.696 kb on - strand, within GFF3497at 3.696 kb on - strand, within GFF3497at 3.773 kb on + strand, within GFF3497at 3.773 kb on + strand, within GFF3497at 3.774 kb on - strand, within GFF3497at 3.833 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.349 kb on + strandat 4.350 kb on - strandat 4.352 kb on - strandat 4.361 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.376 kb on + strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.377 kb on - strandat 4.519 kb on + strand, within GFF3499at 4.520 kb on - strand, within GFF3499at 4.520 kb on - strand, within GFF3499at 4.634 kb on + strand, within GFF3499at 4.634 kb on + strand, within GFF3499at 4.635 kb on - strand, within GFF3499at 4.643 kb on + strand, within GFF3499at 4.644 kb on - strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.649 kb on + strand, within GFF3499at 4.650 kb on - strand, within GFF3499at 4.650 kb on - strand, within GFF3499at 4.709 kb on + strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.710 kb on - strand, within GFF3499at 4.721 kb on + strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.722 kb on - strand, within GFF3499at 4.814 kb on + strand, within GFF3499at 4.814 kb on + strand, within GFF3499at 4.814 kb on + strand, within GFF3499at 4.815 kb on - strand, within GFF3499at 4.815 kb on - strand, within GFF3499at 4.815 kb on - strand, within GFF3499at 4.841 kb on + strand, within GFF3499at 4.841 kb on + strand, within GFF3499at 4.841 kb on + strand, within GFF3499at 4.853 kb on + strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 4.854 kb on - strand, within GFF3499at 4.854 kb on - strand, within GFF3499

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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2,178 + GFF3496 0.59 +0.2
2,178 + GFF3496 0.59 +0.4
2,179 - GFF3496 0.59 +0.0
2,179 - GFF3496 0.59 +0.4
2,181 + GFF3496 0.59 -0.3
2,310 + GFF3496 0.65 -0.4
2,311 - GFF3496 0.65 +0.3
2,311 - GFF3496 0.65 +0.8
2,430 + GFF3496 0.72 -0.8
2,431 - GFF3496 0.72 -0.3
2,481 + GFF3496 0.74 -0.3
2,481 + GFF3496 0.74 -0.8
2,481 + GFF3496 0.74 +0.5
2,481 + GFF3496 0.74 -0.2
2,481 + GFF3496 0.74 -0.4
2,482 - GFF3496 0.74 -0.1
2,482 - GFF3496 0.74 +0.3
2,482 - GFF3496 0.74 -0.3
2,485 - GFF3496 0.75 -0.1
2,535 + GFF3496 0.77 -0.5
2,535 + GFF3496 0.77 -0.4
2,536 - GFF3496 0.77 -0.1
2,536 - GFF3496 0.77 -0.1
2,560 - GFF3496 0.78 -0.5
2,560 - GFF3496 0.78 -1.2
2,586 + GFF3496 0.80 +2.2
2,586 + GFF3496 0.80 +0.8
2,587 - GFF3496 0.80 -0.2
2,736 + GFF3496 0.88 +1.2
2,736 + GFF3496 0.88 +0.5
2,787 + +0.1
2,787 + +2.2
2,787 + -0.1
2,787 + +0.2
2,788 - -0.1
2,788 - -1.0
2,788 - +0.1
2,788 - +0.4
2,788 - -0.5
2,788 - -2.0
2,788 - +0.8
3,021 + +0.2
3,021 + -0.7
3,021 + +0.2
3,021 + -0.1
3,021 + -1.0
3,022 - -2.5
3,022 - -0.4
3,022 - -0.3
3,072 + -0.3
3,073 + -0.2
3,073 + -0.2
3,073 + -0.1
3,073 + -1.2
3,073 + +0.8
3,073 + +0.2
3,074 - +0.8
3,074 - +1.5
3,074 - -1.2
3,074 - +0.5
3,296 + GFF3497 0.26 -0.6
3,296 + GFF3497 0.26 -0.4
3,296 + GFF3497 0.26 -0.8
3,296 + GFF3497 0.26 -0.7
3,297 - GFF3497 0.26 +0.3
3,297 - GFF3497 0.26 -0.6
3,297 - GFF3497 0.26 -1.0
3,297 - GFF3497 0.26 -0.8
3,297 - GFF3497 0.26 -0.3
3,297 - GFF3497 0.26 +0.4
3,365 + GFF3497 0.35 -0.2
3,365 + GFF3497 0.35 -0.0
3,365 + GFF3497 0.35 -0.6
3,365 + GFF3497 0.35 -0.8
3,366 - GFF3497 0.35 -0.3
3,366 - GFF3497 0.35 -0.8
3,366 - GFF3497 0.35 -0.4
3,431 + GFF3497 0.43 +0.8
3,432 - GFF3497 0.44 +0.3
3,432 - GFF3497 0.44 -0.2
3,647 + GFF3497 0.71 -0.7
3,647 + GFF3497 0.71 -0.5
3,647 + GFF3497 0.71 -0.8
3,695 + GFF3497 0.77 +0.4
3,695 + GFF3497 0.77 +0.1
3,696 - GFF3497 0.77 -0.6
3,696 - GFF3497 0.77 -1.4
3,773 + GFF3497 0.87 -0.4
3,773 + GFF3497 0.87 -0.9
3,774 - GFF3497 0.87 -0.7
3,833 + -0.9
4,349 + -0.7
4,349 + -0.3
4,349 + +1.1
4,349 + +0.0
4,349 + -0.4
4,349 + -0.5
4,350 - -1.0
4,352 - -0.2
4,361 + -0.7
4,376 + -0.3
4,376 + -0.6
4,376 + -0.1
4,376 + +0.3
4,376 + +0.1
4,376 + -0.3
4,377 - -0.7
4,377 - +0.5
4,377 - -0.5
4,377 - -0.1
4,377 - +0.3
4,377 - +0.1
4,377 - -0.3
4,377 - +0.1
4,519 + GFF3499 0.13 -0.8
4,520 - GFF3499 0.13 -0.1
4,520 - GFF3499 0.13 -0.6
4,634 + GFF3499 0.22 -1.0
4,634 + GFF3499 0.22 -2.2
4,635 - GFF3499 0.23 +0.4
4,643 + GFF3499 0.23 -0.3
4,644 - GFF3499 0.23 -0.8
4,649 + GFF3499 0.24 +0.7
4,649 + GFF3499 0.24 -2.4
4,649 + GFF3499 0.24 -0.7
4,649 + GFF3499 0.24 +1.8
4,649 + GFF3499 0.24 +0.3
4,649 + GFF3499 0.24 +0.2
4,649 + GFF3499 0.24 +0.2
4,649 + GFF3499 0.24 +0.5
4,649 + GFF3499 0.24 -1.0
4,650 - GFF3499 0.24 -0.8
4,650 - GFF3499 0.24 -1.2
4,709 + GFF3499 0.29 -1.0
4,710 - GFF3499 0.29 +0.8
4,710 - GFF3499 0.29 +0.8
4,710 - GFF3499 0.29 -0.8
4,710 - GFF3499 0.29 +0.1
4,710 - GFF3499 0.29 -0.1
4,721 + GFF3499 0.30 -0.6
4,722 - GFF3499 0.30 -0.8
4,722 - GFF3499 0.30 -0.7
4,722 - GFF3499 0.30 -0.0
4,722 - GFF3499 0.30 +0.4
4,814 + GFF3499 0.37 -0.3
4,814 + GFF3499 0.37 +0.9
4,814 + GFF3499 0.37 -0.1
4,815 - GFF3499 0.37 +0.7
4,815 - GFF3499 0.37 +0.4
4,815 - GFF3499 0.37 -1.9
4,841 + GFF3499 0.39 +0.5
4,841 + GFF3499 0.39 -0.1
4,841 + GFF3499 0.39 -0.0
4,853 + GFF3499 0.40 -0.4
4,854 - GFF3499 0.40 +0.1
4,854 - GFF3499 0.40 +0.1
4,854 - GFF3499 0.40 +0.8
4,854 - GFF3499 0.40 +1.8

Or see this region's nucleotide sequence