Strain Fitness in Variovorax sp. SCN45 around GFF3317

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
142,316	+		GFF3314	0.83	+0.2
142,316	+		GFF3314	0.83	-0.2
142,317	-		GFF3314	0.83	-0.4
142,317	-		GFF3314	0.83	-0.2
142,403	+				-0.2
142,403	+				-0.6
142,404	-				-0.7
142,404	-				+0.3
142,584	+				-0.5
142,584	+				+0.3
142,584	+				+1.8
142,584	+				-1.8
142,584	+				+0.5
142,584	+				-0.8
142,584	+				+0.2
142,584	+				-0.5
142,584	+				+0.0
142,584	+				-1.4
142,588	+				-0.8
142,588	+				+0.2
142,588	+				-0.2
142,588	+				-0.8
142,588	+				+1.0
142,588	+				-0.4
142,588	+				-1.3
142,588	+				+0.2
142,588	+				-0.1
142,588	+				+0.2
142,588	+				-0.4
142,588	+				+0.4
142,588	+				-0.3
142,589	-				+0.5
142,589	-				+0.1
142,589	-				-0.6
142,589	-				+0.3
142,589	-				-0.1
142,589	-				-0.7
142,589	-				-0.0
142,589	-				-2.1
142,589	-				+0.2
142,589	-				-1.2
142,589	-				+0.0
142,589	-				+0.7
142,589	-				+0.1
142,589	-				+0.8
142,589	-				+1.6
142,589	-				+0.2
142,589	-				-0.1
142,838	+		GFF3315	0.63	+1.2
142,838	+		GFF3315	0.63	-0.3
142,838	+		GFF3315	0.63	-0.5
142,838	+		GFF3315	0.63	+0.5
142,838	+		GFF3315	0.63	-1.4
142,838	+		GFF3315	0.63	+0.6
142,839	-		GFF3315	0.63	-0.1
142,839	-		GFF3315	0.63	-0.2
142,839	-		GFF3315	0.63	-0.0
142,839	-		GFF3315	0.63	-0.2
142,839	-		GFF3315	0.63	+0.1
142,915	+		GFF3315	0.82	-1.3
142,915	+		GFF3315	0.82	-0.5
142,915	+		GFF3315	0.82	+0.1
142,915	+		GFF3315	0.82	-1.6
142,915	+		GFF3315	0.82	+0.3
142,915	+		GFF3315	0.82	-0.5
142,915	+		GFF3315	0.82	-1.0
142,916	-		GFF3315	0.82	+0.2
142,916	-		GFF3315	0.82	+0.3
142,998	+				-1.0
142,998	+				+0.6
142,998	+				-0.7
142,998	+				+1.5
142,998	+				-0.2
142,998	+				+0.6
143,221	+				-0.8
143,221	+				-0.9
143,221	+				-1.1
143,221	+				-0.2
143,221	+				-0.7
143,221	+				-0.1
143,221	+				+0.1
143,221	+				-1.7
143,222	-				-2.4
143,222	-				+0.6
143,222	-				-0.5
143,222	-				-2.1
143,532	-				-0.3
143,742	-		GFF3317	0.19	+0.2
143,894	+		GFF3317	0.26	-0.2
143,894	+		GFF3317	0.26	+1.3
143,894	+		GFF3317	0.26	+0.3
143,894	+		GFF3317	0.26	-0.2
143,895	-		GFF3317	0.26	-0.2
143,895	-		GFF3317	0.26	-0.2
145,137	-		GFF3317	0.81	+0.2
145,424	+				-2.4
145,424	+				+0.1
145,424	+				+0.0
145,424	+				-0.7
145,425	-				-0.7
145,440	+				-1.0
145,625	-		GFF3318	0.13	-0.1
145,625	-		GFF3318	0.13	-0.9
145,669	+		GFF3318	0.22	-1.2
145,669	+		GFF3318	0.22	+1.6
145,861	+		GFF3318	0.62	+0.1
145,862	-		GFF3318	0.62	+0.0
145,892	-		GFF3318	0.68	-0.2
145,928	-		GFF3318	0.76	-0.2
145,964	-		GFF3318	0.83	-0.3
145,973	-		GFF3318	0.85	+1.5
145,996	+		GFF3318	0.90	+0.6
145,996	+		GFF3318	0.90	-0.1
145,996	+		GFF3318	0.90	+0.0
145,997	-				+1.2
145,997	-				-0.3
145,997	-				-0.2
145,997	-				-0.4
145,997	-				-0.8
145,997	-				+0.0
145,997	-				-0.4
146,082	+				-0.8
146,083	-				-0.6
146,083	-				-0.4
146,083	-				+1.2
146,503	+		GFF3319	0.35	-0.1
146,504	-		GFF3319	0.35	-0.6