Strain Fitness in Variovorax sp. SCN45 around GFF3274

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
93,363	+				+0.8
93,363	+				-0.4
93,363	+				-1.2
93,363	+				+0.0
93,363	+				-0.2
93,363	+				+1.0
93,363	+				-0.8
93,363	+				-1.9
93,363	+				+1.8
93,363	+				-0.4
93,363	+				+1.1
93,363	+				-0.1
93,364	-				-0.2
93,364	-				-0.3
93,364	-				-0.3
93,364	-				-0.1
93,364	-				-1.3
93,364	-				+0.6
93,364	-				+0.7
93,364	-				-1.4
93,364	-				-0.3
93,364	-				+0.9
93,364	-				-2.2
93,364	-				-0.3
93,364	-				-1.2
93,571	+		GFF3273	0.31	-0.3
93,750	+		GFF3273	0.50	+0.5
93,750	+		GFF3273	0.50	-0.4
93,750	+		GFF3273	0.50	-0.8
93,751	-		GFF3273	0.50	-0.4
93,751	-		GFF3273	0.50	-0.4
93,751	-		GFF3273	0.50	+1.7
93,942	+		GFF3273	0.71	-2.1
93,942	+		GFF3273	0.71	+0.4
93,943	-		GFF3273	0.71	-0.1
93,943	-		GFF3273	0.71	+0.5
93,943	-		GFF3273	0.71	-0.5
93,943	-		GFF3273	0.71	-0.5
94,221	+				+0.8
94,221	+				+0.1
94,221	+				-0.0
94,221	+				+0.1
94,221	+				-0.5
94,221	+				+3.8
94,221	+				+0.2
94,221	+				+0.7
94,222	-				+0.9
94,222	-				-0.3
94,222	-				-1.0
94,222	-				-0.0
94,222	-				-0.6
94,224	+				-0.4
94,224	+				-1.5
94,224	+				-0.3
94,224	+				-1.4
94,224	+				-0.7
94,224	+				+0.0
94,224	+				+0.1
94,224	+				-1.8
94,224	+				-0.7
94,224	+				-0.8
94,225	-				-0.1
94,225	-				-0.1
94,225	-				-0.3
94,225	-				-0.2
94,231	+				+0.0
94,231	+				+0.0
94,231	+				-0.4
94,231	+				+0.2
94,231	+				-0.5
94,231	+				-0.6
94,231	+				-0.1
94,231	+				+0.4
94,231	+				+0.2
94,232	-				-0.5
94,232	-				-0.5
94,232	-				-2.4
94,232	-				+0.6
94,232	-				+0.0
94,232	-				+0.3
94,232	-				-0.9
94,232	-				-1.5
94,238	+				-0.1
94,238	+				-0.2
94,238	+				-1.5
94,238	+				-0.7
94,238	+				+0.0
94,239	-				-1.3
94,239	-				-0.4
94,239	-				-0.2
94,239	-				-0.2
94,239	-				-0.3
94,239	-				+0.8
94,239	-				-1.4
94,239	-				+0.1
94,239	-				-0.7
94,239	-				-0.5
94,239	-				-1.0
94,668	+		GFF3274	0.75	-0.5
94,668	+		GFF3274	0.75	-2.8
94,668	+		GFF3274	0.75	-0.1
94,669	-		GFF3274	0.76	-1.1
94,669	-		GFF3274	0.76	+0.1
94,669	-		GFF3274	0.76	-1.4
94,669	-		GFF3274	0.76	-0.2
94,669	-		GFF3274	0.76	-0.5
94,669	-		GFF3274	0.76	+0.0
94,682	-		GFF3274	0.78	-0.5
94,682	-		GFF3274	0.78	-1.4
94,773	+				-0.3
94,773	+				-1.2
94,773	+				+0.2
94,773	+				+0.1
94,774	-				+0.5
94,774	-				-0.4
94,774	-				+0.3
94,774	-				-0.1
94,813	+				-1.2
94,813	+				-0.5
94,814	-				-1.4
94,814	-				-0.9
94,814	-				-0.7
94,840	-				+0.2
94,840	-				-0.0
94,840	-				+0.0
94,840	-				-0.3
94,840	-				-0.2
94,840	-				-0.3
94,840	-				-0.3
94,872	+				-1.3
94,872	+				-1.0
94,873	-				-1.2
94,873	-				-0.1
94,873	-				-0.3
94,873	-				+1.3
94,873	-				-0.4
94,873	-				-0.3
95,082	+		GFF3275	0.15	-1.2
95,083	-		GFF3275	0.15	-0.5