Strain Fitness in Variovorax sp. SCN45 around GFF2973

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2972 and GFF2973 are separated by 119 nucleotidesGFF2973 and GFF2974 are separated by 62 nucleotidesGFF2974 and GFF2975 are separated by 35 nucleotides GFF2972 - Radical SAM domain protein, at 404,241 to 405,335 GFF2972 GFF2973 - Transcriptional regulator, at 405,455 to 406,033 GFF2973 GFF2974 - Cell division inhibitor, at 406,096 to 406,518 GFF2974 GFF2975 - SAM-dependent methyltransferase, at 406,554 to 407,510 GFF2975 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1 2at 404.470 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.533 kb on + strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.534 kb on - strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.743 kb on + strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.744 kb on - strand, within GFF2972at 404.899 kb on + strand, within GFF2972at 404.900 kb on - strand, within GFF2972at 404.900 kb on - strand, within GFF2972at 404.900 kb on - strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.929 kb on + strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.930 kb on - strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.941 kb on + strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 404.942 kb on - strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.037 kb on + strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.038 kb on - strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.064 kb on + strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.065 kb on - strand, within GFF2972at 405.115 kb on + strand, within GFF2972at 405.115 kb on + strand, within GFF2972at 405.115 kb on + strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.116 kb on - strand, within GFF2972at 405.358 kb on - strandat 405.365 kb on - strandat 405.375 kb on + strandat 405.698 kb on + strand, within GFF2973at 406.136 kb on - strandat 406.136 kb on - strandat 406.136 kb on - strandat 406.414 kb on + strand, within GFF2974at 406.415 kb on - strand, within GFF2974at 406.415 kb on - strand, within GFF2974at 406.439 kb on - strand, within GFF2974at 406.559 kb on + strandat 406.559 kb on + strandat 406.560 kb on - strandat 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.683 kb on + strand, within GFF2975at 406.683 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 407.010 kb on + strand, within GFF2975at 407.011 kb on - strand, within GFF2975at 407.011 kb on - strand, within GFF2975

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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404,470 + GFF2972 0.21 +0.9
404,533 + GFF2972 0.27 +0.8
404,533 + GFF2972 0.27 -1.5
404,533 + GFF2972 0.27 +0.8
404,533 + GFF2972 0.27 -0.5
404,534 - GFF2972 0.27 -0.3
404,534 - GFF2972 0.27 -1.0
404,534 - GFF2972 0.27 +0.4
404,534 - GFF2972 0.27 +1.1
404,743 + GFF2972 0.46 -0.7
404,743 + GFF2972 0.46 -1.1
404,743 + GFF2972 0.46 -0.6
404,743 + GFF2972 0.46 -0.2
404,743 + GFF2972 0.46 +0.9
404,743 + GFF2972 0.46 -1.5
404,743 + GFF2972 0.46 -0.0
404,743 + GFF2972 0.46 +0.5
404,743 + GFF2972 0.46 +1.5
404,744 - GFF2972 0.46 -1.0
404,744 - GFF2972 0.46 +0.3
404,744 - GFF2972 0.46 -1.0
404,744 - GFF2972 0.46 -0.4
404,744 - GFF2972 0.46 -0.1
404,744 - GFF2972 0.46 -0.5
404,899 + GFF2972 0.60 +1.8
404,900 - GFF2972 0.60 +0.5
404,900 - GFF2972 0.60 -0.6
404,900 - GFF2972 0.60 +0.6
404,929 + GFF2972 0.63 +0.0
404,929 + GFF2972 0.63 -0.5
404,929 + GFF2972 0.63 -0.2
404,929 + GFF2972 0.63 +0.2
404,929 + GFF2972 0.63 +0.4
404,929 + GFF2972 0.63 -0.2
404,929 + GFF2972 0.63 +1.7
404,930 - GFF2972 0.63 +1.1
404,930 - GFF2972 0.63 +0.5
404,930 - GFF2972 0.63 -0.3
404,930 - GFF2972 0.63 -0.7
404,941 + GFF2972 0.64 -0.2
404,941 + GFF2972 0.64 -0.1
404,941 + GFF2972 0.64 -0.5
404,941 + GFF2972 0.64 -0.7
404,941 + GFF2972 0.64 -1.6
404,941 + GFF2972 0.64 -0.6
404,941 + GFF2972 0.64 -0.3
404,942 - GFF2972 0.64 +0.4
404,942 - GFF2972 0.64 -1.3
404,942 - GFF2972 0.64 +0.1
404,942 - GFF2972 0.64 -1.2
404,942 - GFF2972 0.64 -1.6
404,942 - GFF2972 0.64 -0.6
404,942 - GFF2972 0.64 +0.3
404,942 - GFF2972 0.64 +0.1
405,037 + GFF2972 0.73 -0.8
405,037 + GFF2972 0.73 +0.4
405,037 + GFF2972 0.73 +0.7
405,037 + GFF2972 0.73 +0.8
405,037 + GFF2972 0.73 -0.2
405,038 - GFF2972 0.73 -0.2
405,038 - GFF2972 0.73 -0.4
405,038 - GFF2972 0.73 +0.9
405,038 - GFF2972 0.73 -0.1
405,038 - GFF2972 0.73 -1.3
405,064 + GFF2972 0.75 -1.0
405,064 + GFF2972 0.75 -0.3
405,064 + GFF2972 0.75 -0.2
405,064 + GFF2972 0.75 -0.1
405,064 + GFF2972 0.75 -0.0
405,064 + GFF2972 0.75 +0.8
405,064 + GFF2972 0.75 +0.3
405,064 + GFF2972 0.75 +0.3
405,065 - GFF2972 0.75 +1.3
405,065 - GFF2972 0.75 -0.3
405,065 - GFF2972 0.75 +0.1
405,065 - GFF2972 0.75 -0.0
405,115 + GFF2972 0.80 -1.6
405,115 + GFF2972 0.80 +0.2
405,115 + GFF2972 0.80 +0.5
405,116 - GFF2972 0.80 +0.3
405,116 - GFF2972 0.80 -0.2
405,116 - GFF2972 0.80 +1.1
405,116 - GFF2972 0.80 +1.0
405,358 - +0.7
405,365 - +1.4
405,375 + -0.3
405,698 + GFF2973 0.42 -0.8
406,136 - -0.2
406,136 - +0.4
406,136 - -0.5
406,414 + GFF2974 0.75 -1.0
406,415 - GFF2974 0.75 -0.8
406,415 - GFF2974 0.75 +0.7
406,439 - GFF2974 0.81 -0.3
406,559 + -0.2
406,559 + -0.0
406,560 - -0.4
406,659 + GFF2975 0.11 -0.6
406,659 + GFF2975 0.11 +0.7
406,659 + GFF2975 0.11 -1.0
406,659 + GFF2975 0.11 +1.5
406,659 + GFF2975 0.11 +1.2
406,659 + GFF2975 0.11 +0.5
406,659 + GFF2975 0.11 +0.2
406,659 + GFF2975 0.11 -0.2
406,659 + GFF2975 0.11 -0.0
406,660 - GFF2975 0.11 +1.1
406,660 - GFF2975 0.11 +1.0
406,660 - GFF2975 0.11 -0.5
406,660 - GFF2975 0.11 -0.1
406,660 - GFF2975 0.11 -0.2
406,660 - GFF2975 0.11 -0.8
406,683 + GFF2975 0.13 -0.9
406,683 + GFF2975 0.13 -1.8
406,704 + GFF2975 0.16 +0.5
406,704 + GFF2975 0.16 -0.2
406,704 + GFF2975 0.16 -0.3
406,704 + GFF2975 0.16 -0.3
406,704 + GFF2975 0.16 -0.5
406,705 - GFF2975 0.16 -0.5
406,705 - GFF2975 0.16 +0.3
406,705 - GFF2975 0.16 +0.5
406,705 - GFF2975 0.16 +1.5
406,705 - GFF2975 0.16 -1.3
406,705 - GFF2975 0.16 +0.4
406,705 - GFF2975 0.16 +0.1
406,705 - GFF2975 0.16 +0.1
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 +0.4
406,705 - GFF2975 0.16 +0.4
406,909 - GFF2975 0.37 -1.5
406,909 - GFF2975 0.37 -0.3
406,909 - GFF2975 0.37 -1.0
407,010 + GFF2975 0.48 -0.7
407,011 - GFF2975 0.48 -0.7
407,011 - GFF2975 0.48 +1.4

Or see this region's nucleotide sequence