Strain Fitness in Variovorax sp. SCN45 around GFF2958

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2957 and GFF2958 are separated by 4 nucleotidesGFF2958 and GFF2959 overlap by 4 nucleotidesGFF2959 and GFF2960 are separated by 64 nucleotides GFF2957 - UPF0192 protein YfaS, at 381,130 to 385,842 GFF2957 GFF2958 - hypothetical protein, at 385,847 to 387,583 GFF2958 GFF2959 - Uncharacterized protein YfaP, at 387,580 to 388,395 GFF2959 GFF2960 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 388,460 to 389,023 GFF2960 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 385.267 kb on + strand, within GFF2957at 385.267 kb on + strand, within GFF2957at 385.267 kb on + strand, within GFF2957at 385.267 kb on + strand, within GFF2957at 385.268 kb on - strand, within GFF2957at 385.268 kb on - strand, within GFF2957at 385.268 kb on - strand, within GFF2957at 385.492 kb on + strandat 385.492 kb on + strandat 385.493 kb on - strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.780 kb on + strandat 385.781 kb on - strandat 385.781 kb on - strandat 385.781 kb on - strandat 385.781 kb on - strandat 385.781 kb on - strandat 385.781 kb on - strandat 385.781 kb on - strandat 385.781 kb on - strandat 386.085 kb on + strand, within GFF2958at 386.085 kb on + strand, within GFF2958at 386.085 kb on + strand, within GFF2958at 386.086 kb on - strand, within GFF2958at 386.103 kb on - strand, within GFF2958at 386.103 kb on - strand, within GFF2958at 386.103 kb on - strand, within GFF2958at 386.108 kb on + strand, within GFF2958at 386.108 kb on + strand, within GFF2958at 386.108 kb on + strand, within GFF2958at 386.108 kb on + strand, within GFF2958at 386.108 kb on + strand, within GFF2958at 386.108 kb on + strand, within GFF2958at 386.109 kb on - strand, within GFF2958at 386.109 kb on - strand, within GFF2958at 386.109 kb on - strand, within GFF2958at 386.109 kb on - strand, within GFF2958at 386.109 kb on - strand, within GFF2958at 386.109 kb on - strand, within GFF2958at 386.141 kb on + strand, within GFF2958at 386.141 kb on + strand, within GFF2958at 386.180 kb on + strand, within GFF2958at 386.180 kb on + strand, within GFF2958at 386.181 kb on - strand, within GFF2958at 386.181 kb on - strand, within GFF2958at 386.243 kb on + strand, within GFF2958at 386.244 kb on - strand, within GFF2958at 386.244 kb on - strand, within GFF2958at 386.515 kb on + strand, within GFF2958at 386.515 kb on + strand, within GFF2958at 386.515 kb on + strand, within GFF2958at 386.515 kb on + strand, within GFF2958at 386.515 kb on - strand, within GFF2958at 386.516 kb on - strand, within GFF2958at 386.516 kb on - strand, within GFF2958at 386.516 kb on - strand, within GFF2958at 386.721 kb on - strand, within GFF2958at 386.861 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.909 kb on + strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.910 kb on - strand, within GFF2958at 386.990 kb on + strand, within GFF2958at 386.990 kb on + strand, within GFF2958at 386.990 kb on + strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 386.991 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.144 kb on - strand, within GFF2958at 387.497 kb on + strandat 387.497 kb on + strandat 387.497 kb on + strandat 387.497 kb on + strandat 387.498 kb on - strandat 387.498 kb on - strandat 387.624 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.639 kb on + strandat 387.640 kb on - strandat 387.640 kb on - strandat 388.006 kb on + strand, within GFF2959at 388.006 kb on + strand, within GFF2959at 388.006 kb on + strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.007 kb on - strand, within GFF2959at 388.120 kb on + strand, within GFF2959at 388.120 kb on + strand, within GFF2959at 388.120 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.222 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.240 kb on + strand, within GFF2959at 388.241 kb on - strand, within GFF2959

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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385,267 + GFF2957 0.88 +0.9
385,267 + GFF2957 0.88 -0.3
385,267 + GFF2957 0.88 -0.2
385,267 + GFF2957 0.88 -0.8
385,268 - GFF2957 0.88 -0.4
385,268 - GFF2957 0.88 -0.4
385,268 - GFF2957 0.88 -0.1
385,492 + +0.0
385,492 + -0.6
385,493 - -0.7
385,780 + +1.5
385,780 + -1.3
385,780 + -0.4
385,780 + +0.3
385,780 + +1.5
385,780 + +0.1
385,780 + +0.2
385,780 + -0.6
385,781 - -0.2
385,781 - +1.9
385,781 - +0.3
385,781 - -0.4
385,781 - -0.0
385,781 - +1.3
385,781 - +0.8
385,781 - -0.5
386,085 + GFF2958 0.14 +0.6
386,085 + GFF2958 0.14 -0.3
386,085 + GFF2958 0.14 -0.1
386,086 - GFF2958 0.14 +0.2
386,103 - GFF2958 0.15 +1.1
386,103 - GFF2958 0.15 -0.7
386,103 - GFF2958 0.15 -0.8
386,108 + GFF2958 0.15 -1.1
386,108 + GFF2958 0.15 +0.9
386,108 + GFF2958 0.15 +1.9
386,108 + GFF2958 0.15 -0.2
386,108 + GFF2958 0.15 +0.2
386,108 + GFF2958 0.15 -0.5
386,109 - GFF2958 0.15 +0.1
386,109 - GFF2958 0.15 +0.4
386,109 - GFF2958 0.15 +0.0
386,109 - GFF2958 0.15 -0.3
386,109 - GFF2958 0.15 -0.0
386,109 - GFF2958 0.15 +1.5
386,141 + GFF2958 0.17 -0.0
386,141 + GFF2958 0.17 -0.9
386,180 + GFF2958 0.19 -0.2
386,180 + GFF2958 0.19 -0.5
386,181 - GFF2958 0.19 -0.0
386,181 - GFF2958 0.19 +0.9
386,243 + GFF2958 0.23 +0.4
386,244 - GFF2958 0.23 -0.5
386,244 - GFF2958 0.23 -0.4
386,515 + GFF2958 0.38 +0.2
386,515 + GFF2958 0.38 +0.6
386,515 + GFF2958 0.38 -0.0
386,515 + GFF2958 0.38 +0.4
386,515 - GFF2958 0.38 -0.7
386,516 - GFF2958 0.39 +0.5
386,516 - GFF2958 0.39 -0.5
386,516 - GFF2958 0.39 -2.9
386,721 - GFF2958 0.50 -0.0
386,861 + GFF2958 0.58 -0.9
386,909 + GFF2958 0.61 +0.4
386,909 + GFF2958 0.61 +0.2
386,909 + GFF2958 0.61 +0.1
386,909 + GFF2958 0.61 -1.0
386,910 - GFF2958 0.61 +0.6
386,910 - GFF2958 0.61 -0.7
386,910 - GFF2958 0.61 +0.5
386,910 - GFF2958 0.61 -0.5
386,910 - GFF2958 0.61 +1.5
386,990 + GFF2958 0.66 -0.4
386,990 + GFF2958 0.66 -0.1
386,990 + GFF2958 0.66 -0.0
386,991 - GFF2958 0.66 +0.6
386,991 - GFF2958 0.66 +0.7
386,991 - GFF2958 0.66 -0.2
386,991 - GFF2958 0.66 -0.6
386,991 - GFF2958 0.66 -0.4
386,991 - GFF2958 0.66 -0.8
386,991 - GFF2958 0.66 -0.3
386,991 - GFF2958 0.66 +0.5
387,144 - GFF2958 0.75 +0.5
387,144 - GFF2958 0.75 -1.4
387,144 - GFF2958 0.75 +0.1
387,144 - GFF2958 0.75 -2.5
387,497 + -0.2
387,497 + -0.6
387,497 + -0.9
387,497 + +0.0
387,498 - -0.3
387,498 - +0.4
387,624 + -0.5
387,639 + +0.7
387,639 + -0.5
387,639 + -1.3
387,639 + -0.5
387,639 + -0.1
387,640 - -0.8
387,640 - -0.6
388,006 + GFF2959 0.52 -1.2
388,006 + GFF2959 0.52 -0.2
388,006 + GFF2959 0.52 +0.0
388,007 - GFF2959 0.52 +1.1
388,007 - GFF2959 0.52 +0.1
388,007 - GFF2959 0.52 +0.3
388,007 - GFF2959 0.52 +0.2
388,120 + GFF2959 0.66 +0.0
388,120 + GFF2959 0.66 -0.0
388,120 + GFF2959 0.66 +0.6
388,222 + GFF2959 0.79 +0.5
388,222 + GFF2959 0.79 -0.5
388,222 + GFF2959 0.79 -0.0
388,222 + GFF2959 0.79 +1.0
388,222 + GFF2959 0.79 -0.5
388,222 + GFF2959 0.79 -0.5
388,240 + GFF2959 0.81 -0.9
388,240 + GFF2959 0.81 -0.2
388,240 + GFF2959 0.81 -0.8
388,240 + GFF2959 0.81 -0.4
388,241 - GFF2959 0.81 -2.2

Or see this region's nucleotide sequence