Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2953 and GFF2954 are separated by 148 nucleotides GFF2954 and GFF2955 are separated by 143 nucleotides
GFF2953 - Transcriptional regulator, AraC family, at 376,074 to 377,039
GFF2953
GFF2954 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 377,188 to 378,609
GFF2954
GFF2955 - hypothetical protein, at 378,753 to 380,450
GFF2955
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.792 kb on + strand, within GFF2953 at 376.793 kb on - strand, within GFF2953 at 376.793 kb on - strand, within GFF2953 at 376.793 kb on - strand, within GFF2953 at 376.793 kb on - strand, within GFF2953 at 376.793 kb on - strand, within GFF2953 at 376.798 kb on + strand, within GFF2953 at 376.798 kb on + strand, within GFF2953 at 376.798 kb on + strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.799 kb on - strand, within GFF2953 at 376.978 kb on + strand at 376.979 kb on - strand at 377.051 kb on + strand at 377.051 kb on + strand at 377.051 kb on + strand at 377.051 kb on + strand at 377.051 kb on + strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.052 kb on - strand at 377.053 kb on - strand at 377.081 kb on + strand at 377.082 kb on - strand at 377.083 kb on + strand at 377.083 kb on + strand at 377.084 kb on - strand at 377.084 kb on - strand at 377.084 kb on - strand at 377.084 kb on - strand at 377.084 kb on - strand at 377.284 kb on + strand at 377.284 kb on + strand at 377.284 kb on + strand at 377.284 kb on + strand at 377.285 kb on - strand at 377.285 kb on - strand at 377.285 kb on - strand at 377.285 kb on - strand at 377.285 kb on - strand at 377.285 kb on - strand at 377.285 kb on - strand at 377.503 kb on + strand, within GFF2954 at 377.503 kb on + strand, within GFF2954 at 377.504 kb on - strand, within GFF2954 at 377.504 kb on - strand, within GFF2954 at 377.504 kb on - strand, within GFF2954 at 377.504 kb on - strand, within GFF2954 at 377.530 kb on + strand, within GFF2954 at 377.530 kb on + strand, within GFF2954 at 377.530 kb on + strand, within GFF2954 at 377.531 kb on - strand, within GFF2954 at 377.728 kb on + strand, within GFF2954 at 377.728 kb on + strand, within GFF2954 at 377.728 kb on + strand, within GFF2954 at 377.728 kb on + strand, within GFF2954 at 377.729 kb on - strand, within GFF2954 at 377.758 kb on + strand, within GFF2954 at 377.758 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.466 kb on + strand, within GFF2954 at 378.467 kb on - strand at 378.467 kb on - strand at 378.467 kb on - strand at 378.469 kb on + strand at 378.469 kb on + strand at 378.469 kb on + strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.478 kb on + strand at 378.478 kb on + strand at 378.478 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.897 kb on + strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.991 kb on - strand, within GFF2955 at 378.991 kb on - strand, within GFF2955 at 378.992 kb on - strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.045 kb on - strand, within GFF2955 at 379.143 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 376,792 + GFF2953 0.74 -2.2 376,792 + GFF2953 0.74 +0.2 376,792 + GFF2953 0.74 +0.7 376,792 + GFF2953 0.74 +1.3 376,792 + GFF2953 0.74 +1.7 376,792 + GFF2953 0.74 -2.4 376,792 + GFF2953 0.74 -1.6 376,792 + GFF2953 0.74 +0.1 376,792 + GFF2953 0.74 -0.9 376,792 + GFF2953 0.74 +0.0 376,793 - GFF2953 0.74 +0.8 376,793 - GFF2953 0.74 +0.0 376,793 - GFF2953 0.74 -0.4 376,793 - GFF2953 0.74 +0.8 376,793 - GFF2953 0.74 -0.6 376,798 + GFF2953 0.75 +0.7 376,798 + GFF2953 0.75 +0.6 376,798 + GFF2953 0.75 -0.3 376,799 - GFF2953 0.75 -0.2 376,799 - GFF2953 0.75 -1.8 376,799 - GFF2953 0.75 -0.9 376,799 - GFF2953 0.75 -0.1 376,799 - GFF2953 0.75 -1.3 376,799 - GFF2953 0.75 +0.1 376,799 - GFF2953 0.75 -0.8 376,799 - GFF2953 0.75 -1.1 376,978 + +0.2 376,979 - -1.1 377,051 + -0.4 377,051 + -0.1 377,051 + -0.3 377,051 + -2.3 377,051 + -0.1 377,052 - -0.4 377,052 - -0.4 377,052 - -0.4 377,052 - -1.9 377,052 - -0.3 377,052 - -1.0 377,052 - -0.1 377,052 - -0.8 377,052 - +1.2 377,053 - +0.5 377,081 + -0.4 377,082 - -0.8 377,083 + -0.6 377,083 + -2.6 377,084 - +0.1 377,084 - -0.8 377,084 - -0.8 377,084 - +0.3 377,084 - -0.6 377,284 + -0.1 377,284 + +2.0 377,284 + +0.5 377,284 + +0.7 377,285 - +0.1 377,285 - +0.2 377,285 - -0.0 377,285 - -0.3 377,285 - -0.3 377,285 - +0.2 377,285 - -0.2 377,503 + GFF2954 0.22 +0.9 377,503 + GFF2954 0.22 -0.0 377,504 - GFF2954 0.22 -1.5 377,504 - GFF2954 0.22 -1.1 377,504 - GFF2954 0.22 +0.3 377,504 - GFF2954 0.22 +0.9 377,530 + GFF2954 0.24 +1.5 377,530 + GFF2954 0.24 +0.4 377,530 + GFF2954 0.24 -0.8 377,531 - GFF2954 0.24 +0.0 377,728 + GFF2954 0.38 +0.5 377,728 + GFF2954 0.38 -0.1 377,728 + GFF2954 0.38 -1.5 377,728 + GFF2954 0.38 +0.4 377,729 - GFF2954 0.38 -0.1 377,758 + GFF2954 0.40 +0.0 377,758 + GFF2954 0.40 -0.1 377,788 + GFF2954 0.42 -0.1 377,788 + GFF2954 0.42 -0.0 377,788 + GFF2954 0.42 -0.5 377,788 + GFF2954 0.42 +0.1 377,788 + GFF2954 0.42 +1.1 377,788 + GFF2954 0.42 +0.3 377,788 + GFF2954 0.42 -0.5 377,788 + GFF2954 0.42 -0.2 377,788 + GFF2954 0.42 +1.1 377,789 - GFF2954 0.42 +0.0 377,789 - GFF2954 0.42 +0.5 377,789 - GFF2954 0.42 -0.3 377,789 - GFF2954 0.42 +0.4 377,789 - GFF2954 0.42 +0.1 377,872 + GFF2954 0.48 -0.2 377,872 + GFF2954 0.48 +2.8 377,872 + GFF2954 0.48 -0.1 377,872 + GFF2954 0.48 -0.6 377,872 + GFF2954 0.48 -1.1 377,873 - GFF2954 0.48 +0.9 377,873 - GFF2954 0.48 +0.4 377,873 - GFF2954 0.48 +0.7 377,873 - GFF2954 0.48 +0.7 378,163 + GFF2954 0.69 +0.4 378,163 + GFF2954 0.69 +0.2 378,163 + GFF2954 0.69 -1.0 378,163 + GFF2954 0.69 -0.1 378,163 + GFF2954 0.69 -0.1 378,163 + GFF2954 0.69 -0.3 378,163 + GFF2954 0.69 +0.6 378,164 - GFF2954 0.69 +0.6 378,164 - GFF2954 0.69 +0.9 378,164 - GFF2954 0.69 +0.2 378,164 - GFF2954 0.69 +1.2 378,164 - GFF2954 0.69 -0.8 378,164 - GFF2954 0.69 +0.9 378,164 - GFF2954 0.69 -0.3 378,184 + GFF2954 0.70 +0.8 378,184 + GFF2954 0.70 +0.5 378,184 + GFF2954 0.70 +0.1 378,184 + GFF2954 0.70 +0.8 378,185 - GFF2954 0.70 -0.1 378,185 - GFF2954 0.70 -0.8 378,185 - GFF2954 0.70 +0.5 378,185 - GFF2954 0.70 -0.6 378,466 + GFF2954 0.90 +0.9 378,467 - -0.1 378,467 - +0.9 378,467 - -0.0 378,469 + -0.7 378,469 + +0.3 378,469 + +0.4 378,470 - +0.9 378,470 - -0.4 378,470 - -0.6 378,470 - +0.4 378,478 + +0.1 378,478 + +1.5 378,478 + -0.1 378,544 + -0.2 378,544 + -0.6 378,544 + -0.8 378,544 + -0.6 378,544 + +0.2 378,544 + -0.3 378,544 + -0.8 378,544 + +0.7 378,544 + -0.1 378,544 + -0.1 378,544 + -0.1 378,544 + -2.4 378,545 - +0.5 378,545 - +0.6 378,545 - -1.2 378,545 - +2.2 378,545 - -0.5 378,545 - +0.6 378,545 - -0.2 378,545 - -0.0 378,545 - -0.4 378,545 - +0.1 378,545 - -1.2 378,545 - -0.7 378,897 + -0.9 378,898 - -1.6 378,898 - -0.3 378,898 - +0.5 378,898 - -0.3 378,987 + GFF2955 0.14 -0.1 378,987 + GFF2955 0.14 -1.3 378,987 + GFF2955 0.14 -0.7 378,987 + GFF2955 0.14 -0.1 378,987 + GFF2955 0.14 +0.1 378,987 + GFF2955 0.14 +0.5 378,987 + GFF2955 0.14 +1.5 378,988 - GFF2955 0.14 -0.1 378,988 - GFF2955 0.14 -0.5 378,988 - GFF2955 0.14 -0.6 378,988 - GFF2955 0.14 -0.9 378,988 - GFF2955 0.14 -2.2 378,990 + GFF2955 0.14 +0.3 378,990 + GFF2955 0.14 -0.1 378,990 + GFF2955 0.14 -0.1 378,990 + GFF2955 0.14 +0.4 378,991 - GFF2955 0.14 -0.1 378,991 - GFF2955 0.14 +0.6 378,992 - GFF2955 0.14 -0.5 379,044 + GFF2955 0.17 +0.0 379,044 + GFF2955 0.17 -1.1 379,044 + GFF2955 0.17 +0.8 379,044 + GFF2955 0.17 -0.4 379,044 + GFF2955 0.17 +0.1 379,045 - GFF2955 0.17 +1.5 379,143 + GFF2955 0.23 -0.1 379,272 + GFF2955 0.31 -0.4 379,272 + GFF2955 0.31 -0.9 379,272 + GFF2955 0.31 +0.7 379,272 + GFF2955 0.31 +0.1
Or see this region's nucleotide sequence