Strain Fitness in Variovorax sp. SCN45 around GFF2940

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2938 and GFF2939 are separated by 8 nucleotidesGFF2939 and GFF2940 overlap by 4 nucleotidesGFF2940 and GFF2941 are separated by 39 nucleotides GFF2938 - Rieske (2Fe-2S) domain protein, at 365,305 to 365,976 GFF2938 GFF2939 - hypothetical protein, at 365,985 to 366,830 GFF2939 GFF2940 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 366,827 to 367,471 GFF2940 GFF2941 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 367,511 to 368,617 GFF2941 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2 3at 366.159 kb on + strand, within GFF2939at 366.165 kb on + strand, within GFF2939at 366.166 kb on - strand, within GFF2939at 366.222 kb on + strand, within GFF2939at 366.222 kb on + strand, within GFF2939at 366.223 kb on - strand, within GFF2939at 366.223 kb on - strand, within GFF2939at 366.223 kb on - strand, within GFF2939at 366.339 kb on + strand, within GFF2939at 366.339 kb on + strand, within GFF2939at 366.340 kb on - strand, within GFF2939at 366.340 kb on - strand, within GFF2939at 366.375 kb on + strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.376 kb on - strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.483 kb on + strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.484 kb on - strand, within GFF2939at 366.489 kb on + strand, within GFF2939at 366.490 kb on - strand, within GFF2939at 366.490 kb on - strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.909 kb on - strand, within GFF2940at 366.909 kb on - strand, within GFF2940at 367.049 kb on + strand, within GFF2940at 367.049 kb on + strand, within GFF2940at 367.050 kb on - strand, within GFF2940at 367.050 kb on - strand, within GFF2940at 367.064 kb on + strand, within GFF2940at 367.064 kb on + strand, within GFF2940at 367.065 kb on - strand, within GFF2940at 367.339 kb on + strand, within GFF2940at 367.340 kb on + strand, within GFF2940at 367.340 kb on + strand, within GFF2940at 367.340 kb on + strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.473 kb on + strandat 367.473 kb on + strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.641 kb on - strand, within GFF2941at 367.641 kb on - strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.772 kb on + strand, within GFF2941at 367.772 kb on + strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.282 kb on + strand, within GFF2941at 368.282 kb on + strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.283 kb on - strand, within GFF2941

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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366,159 + GFF2939 0.21 -0.7
366,165 + GFF2939 0.21 -1.1
366,166 - GFF2939 0.21 +0.1
366,222 + GFF2939 0.28 +1.0
366,222 + GFF2939 0.28 -1.0
366,223 - GFF2939 0.28 -0.0
366,223 - GFF2939 0.28 -0.6
366,223 - GFF2939 0.28 -1.9
366,339 + GFF2939 0.42 -0.2
366,339 + GFF2939 0.42 -0.2
366,340 - GFF2939 0.42 +0.8
366,340 - GFF2939 0.42 -0.2
366,375 + GFF2939 0.46 -1.1
366,376 - GFF2939 0.46 -0.2
366,376 - GFF2939 0.46 -0.1
366,376 - GFF2939 0.46 -0.4
366,376 - GFF2939 0.46 -0.3
366,483 + GFF2939 0.59 -0.5
366,483 + GFF2939 0.59 -0.6
366,483 + GFF2939 0.59 -0.2
366,483 + GFF2939 0.59 -0.1
366,483 + GFF2939 0.59 -0.5
366,483 + GFF2939 0.59 -0.2
366,484 - GFF2939 0.59 +0.4
366,484 - GFF2939 0.59 +0.6
366,484 - GFF2939 0.59 -0.9
366,484 - GFF2939 0.59 +1.5
366,489 + GFF2939 0.60 +2.8
366,490 - GFF2939 0.60 -0.6
366,490 - GFF2939 0.60 +2.2
366,522 + GFF2939 0.63 -0.7
366,522 + GFF2939 0.63 -0.5
366,522 + GFF2939 0.63 +0.5
366,522 + GFF2939 0.63 -0.3
366,523 - GFF2939 0.64 -0.7
366,523 - GFF2939 0.64 +1.5
366,523 - GFF2939 0.64 -0.5
366,523 - GFF2939 0.64 +1.1
366,523 - GFF2939 0.64 +0.0
366,842 + +0.2
366,842 + -0.2
366,842 + +1.1
366,842 + +1.2
366,842 + -0.6
366,843 - -1.1
366,843 - -1.1
366,843 - -0.2
366,843 - +0.5
366,843 - -1.1
366,843 - +1.5
366,843 - -1.5
366,843 - -0.1
366,843 - -0.1
366,843 - -1.9
366,909 - GFF2940 0.13 -1.3
366,909 - GFF2940 0.13 -2.2
367,049 + GFF2940 0.34 -0.0
367,049 + GFF2940 0.34 -0.8
367,050 - GFF2940 0.35 -0.1
367,050 - GFF2940 0.35 -0.2
367,064 + GFF2940 0.37 -0.2
367,064 + GFF2940 0.37 +0.5
367,065 - GFF2940 0.37 +0.3
367,339 + GFF2940 0.79 -0.2
367,340 + GFF2940 0.80 -0.6
367,340 + GFF2940 0.80 -0.3
367,340 + GFF2940 0.80 -1.1
367,341 - GFF2940 0.80 +0.4
367,341 - GFF2940 0.80 +0.7
367,341 - GFF2940 0.80 +0.0
367,341 - GFF2940 0.80 +0.4
367,341 - GFF2940 0.80 +0.3
367,341 - GFF2940 0.80 +0.6
367,473 + -1.0
367,473 + -0.6
367,474 - -0.2
367,474 - +0.7
367,474 - +0.2
367,474 - -1.0
367,474 - -0.8
367,640 + GFF2941 0.12 +0.1
367,640 + GFF2941 0.12 +0.1
367,640 + GFF2941 0.12 -1.7
367,640 + GFF2941 0.12 +0.3
367,640 + GFF2941 0.12 +0.2
367,640 + GFF2941 0.12 -0.2
367,640 + GFF2941 0.12 -1.1
367,641 - GFF2941 0.12 +1.0
367,641 - GFF2941 0.12 -1.1
367,643 + GFF2941 0.12 -0.6
367,643 + GFF2941 0.12 -0.4
367,643 + GFF2941 0.12 +0.8
367,643 + GFF2941 0.12 +0.0
367,643 + GFF2941 0.12 +3.5
367,643 + GFF2941 0.12 -0.4
367,643 + GFF2941 0.12 +0.1
367,643 + GFF2941 0.12 -0.2
367,643 + GFF2941 0.12 -1.1
367,643 + GFF2941 0.12 +0.5
367,643 + GFF2941 0.12 -0.9
367,643 + GFF2941 0.12 -0.2
367,644 - GFF2941 0.12 -0.2
367,644 - GFF2941 0.12 -0.7
367,644 - GFF2941 0.12 -0.3
367,644 - GFF2941 0.12 -0.4
367,644 - GFF2941 0.12 -0.2
367,644 - GFF2941 0.12 +0.2
367,644 - GFF2941 0.12 +0.1
367,644 - GFF2941 0.12 +0.1
367,644 - GFF2941 0.12 -1.6
367,644 - GFF2941 0.12 +0.2
367,772 + GFF2941 0.24 -0.6
367,772 + GFF2941 0.24 -0.5
367,773 - GFF2941 0.24 -0.2
367,773 - GFF2941 0.24 +0.6
367,773 - GFF2941 0.24 +0.4
367,773 - GFF2941 0.24 -0.1
367,773 - GFF2941 0.24 -0.2
367,913 + GFF2941 0.36 -0.1
367,913 + GFF2941 0.36 +0.1
367,913 + GFF2941 0.36 -0.6
367,913 + GFF2941 0.36 -0.7
367,913 + GFF2941 0.36 -1.1
367,913 + GFF2941 0.36 +0.5
367,913 + GFF2941 0.36 +0.2
367,913 + GFF2941 0.36 -0.6
367,913 + GFF2941 0.36 +0.1
367,913 + GFF2941 0.36 -0.8
367,914 - GFF2941 0.36 +0.8
367,914 - GFF2941 0.36 +0.0
367,914 - GFF2941 0.36 -1.6
367,914 - GFF2941 0.36 +1.1
367,914 - GFF2941 0.36 -0.6
367,914 - GFF2941 0.36 +0.0
367,914 - GFF2941 0.36 -0.0
367,914 - GFF2941 0.36 -0.5
367,914 - GFF2941 0.36 +0.5
367,914 - GFF2941 0.36 -0.2
367,914 - GFF2941 0.36 -1.2
367,914 - GFF2941 0.36 -0.5
367,914 - GFF2941 0.36 -0.8
367,914 - GFF2941 0.36 -0.3
367,914 - GFF2941 0.36 -0.5
367,940 + GFF2941 0.39 +0.1
367,940 + GFF2941 0.39 +0.1
367,940 + GFF2941 0.39 +0.9
367,940 + GFF2941 0.39 +0.4
367,940 + GFF2941 0.39 -1.1
367,941 - GFF2941 0.39 +1.2
367,941 - GFF2941 0.39 -0.2
367,941 - GFF2941 0.39 -0.3
367,941 - GFF2941 0.39 -0.2
367,941 - GFF2941 0.39 +0.6
367,941 - GFF2941 0.39 -0.4
367,941 - GFF2941 0.39 -0.8
368,006 + GFF2941 0.45 +0.2
368,006 + GFF2941 0.45 +0.4
368,006 + GFF2941 0.45 -1.0
368,006 + GFF2941 0.45 -0.3
368,006 + GFF2941 0.45 -0.3
368,006 + GFF2941 0.45 -0.4
368,007 - GFF2941 0.45 +0.1
368,007 - GFF2941 0.45 +0.8
368,007 - GFF2941 0.45 +0.7
368,007 - GFF2941 0.45 +0.5
368,007 - GFF2941 0.45 +0.1
368,007 - GFF2941 0.45 -0.7
368,007 - GFF2941 0.45 -0.0
368,282 + GFF2941 0.70 -0.3
368,282 + GFF2941 0.70 +0.2
368,283 - GFF2941 0.70 -0.1
368,283 - GFF2941 0.70 -0.3
368,283 - GFF2941 0.70 -0.9

Or see this region's nucleotide sequence