Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2802 and GFF2803 overlap by 4 nucleotides GFF2803 and GFF2804 are separated by 176 nucleotides GFF2804 and GFF2805 are separated by 145 nucleotides
GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636
GFF2802
GFF2803 - Alanine transaminase (EC 2.6.1.2), at 232,633 to 233,865
GFF2803
GFF2804 - Membrane protein, at 234,042 to 234,425
GFF2804
GFF2805 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 234,571 to 235,047
GFF2805
Position (kb) 232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 231.654 kb on + strand at 231.655 kb on - strand at 231.655 kb on - strand at 231.856 kb on - strand, within GFF2802 at 231.856 kb on - strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.838 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.926 kb on - strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.222 kb on + strand, within GFF2803 at 233.223 kb on - strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.919 kb on + strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 234.013 kb on - strand at 234.015 kb on - strand at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.443 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.449 kb on - strand at 234.449 kb on - strand at 234.449 kb on - strand at 234.451 kb on + strand at 234.451 kb on + strand at 234.452 kb on - strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.483 kb on - strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 231,654 + +1.9 231,655 - -1.1 231,655 - +0.6 231,856 - GFF2802 0.25 -0.8 231,856 - GFF2802 0.25 -0.4 231,894 + GFF2802 0.28 -0.7 231,894 + GFF2802 0.28 +2.3 231,894 + GFF2802 0.28 -0.1 231,894 + GFF2802 0.28 +0.2 231,894 + GFF2802 0.28 +0.3 231,894 + GFF2802 0.28 -0.5 231,894 + GFF2802 0.28 +0.2 231,894 + GFF2802 0.28 -0.2 231,894 + GFF2802 0.28 -0.5 231,895 - GFF2802 0.28 +0.4 231,895 - GFF2802 0.28 +0.2 231,895 - GFF2802 0.28 +0.3 231,895 - GFF2802 0.28 -2.4 231,895 - GFF2802 0.28 -1.0 231,895 - GFF2802 0.28 +0.9 231,895 - GFF2802 0.28 -0.1 231,895 - GFF2802 0.28 -0.4 231,895 - GFF2802 0.28 -0.4 231,895 - GFF2802 0.28 -0.9 231,895 - GFF2802 0.28 -0.0 231,900 + GFF2802 0.29 -0.1 231,900 + GFF2802 0.29 +1.0 231,900 + GFF2802 0.29 +1.5 231,900 + GFF2802 0.29 -0.7 231,901 - GFF2802 0.29 +0.8 231,901 - GFF2802 0.29 +0.1 231,901 - GFF2802 0.29 -0.5 231,901 - GFF2802 0.29 +0.1 231,901 - GFF2802 0.29 +0.0 231,901 - GFF2802 0.29 +0.5 231,901 - GFF2802 0.29 -0.4 231,901 - GFF2802 0.29 +0.6 231,901 - GFF2802 0.29 +0.3 232,459 + GFF2802 0.83 -0.1 232,459 + GFF2802 0.83 +0.8 232,460 - GFF2802 0.83 -0.5 232,460 - GFF2802 0.83 -1.8 232,460 - GFF2802 0.83 -0.6 232,460 - GFF2802 0.83 +0.1 232,460 - GFF2802 0.83 +0.3 232,460 - GFF2802 0.83 -0.2 232,460 - GFF2802 0.83 -1.3 232,838 + GFF2803 0.17 -1.3 232,868 + GFF2803 0.19 -1.3 232,868 + GFF2803 0.19 -0.0 232,868 + GFF2803 0.19 -0.2 232,868 + GFF2803 0.19 +0.7 232,868 + GFF2803 0.19 +2.1 232,868 + GFF2803 0.19 -1.0 232,868 + GFF2803 0.19 +0.3 232,869 - GFF2803 0.19 -0.3 232,869 - GFF2803 0.19 -2.4 232,869 - GFF2803 0.19 -0.8 232,869 - GFF2803 0.19 -2.2 232,926 - GFF2803 0.24 +0.2 233,075 + GFF2803 0.36 -1.4 233,075 + GFF2803 0.36 -2.5 233,075 + GFF2803 0.36 +0.2 233,075 + GFF2803 0.36 +0.8 233,075 + GFF2803 0.36 -1.6 233,076 - GFF2803 0.36 +0.1 233,076 - GFF2803 0.36 -0.3 233,142 - GFF2803 0.41 -2.5 233,142 - GFF2803 0.41 -0.1 233,142 - GFF2803 0.41 -3.3 233,222 + GFF2803 0.48 -0.5 233,223 - GFF2803 0.48 +0.6 233,237 + GFF2803 0.49 -1.1 233,237 + GFF2803 0.49 -2.0 233,313 - GFF2803 0.55 -0.1 233,313 - GFF2803 0.55 -2.5 233,430 - GFF2803 0.65 +0.5 233,430 - GFF2803 0.65 +0.0 233,430 - GFF2803 0.65 -2.0 233,571 - GFF2803 0.76 -1.8 233,571 - GFF2803 0.76 +0.2 233,571 - GFF2803 0.76 -2.0 233,571 - GFF2803 0.76 +0.3 233,571 - GFF2803 0.76 -0.7 233,571 - GFF2803 0.76 -0.8 233,823 - +1.3 233,823 - -0.8 233,823 - +2.2 233,823 - -0.2 233,823 - -0.2 233,823 - -1.3 233,919 + -1.3 233,920 - -2.1 233,920 - -0.2 233,920 - -0.1 233,920 - +0.3 233,920 - -0.8 234,013 - +0.5 234,015 - -0.6 234,354 + GFF2804 0.81 -1.1 234,354 + GFF2804 0.81 -1.5 234,354 + GFF2804 0.81 -2.1 234,354 + GFF2804 0.81 -0.3 234,355 - GFF2804 0.82 +0.7 234,355 - GFF2804 0.82 -0.3 234,355 - GFF2804 0.82 -1.5 234,355 - GFF2804 0.82 -1.0 234,355 - GFF2804 0.82 -1.1 234,355 - GFF2804 0.82 -0.8 234,426 + -0.4 234,426 + +1.9 234,426 + -0.6 234,426 + -0.2 234,426 + -0.3 234,427 - -0.7 234,427 - -1.0 234,427 - -0.3 234,427 - -0.7 234,427 - +0.2 234,427 - -0.0 234,443 + -0.2 234,448 + -0.7 234,448 + +0.5 234,448 + -0.8 234,448 + -0.8 234,448 + -0.3 234,449 - -0.5 234,449 - -0.1 234,449 - +0.5 234,451 + -0.1 234,451 + +0.1 234,452 - -0.1 234,482 + -0.3 234,482 + +0.5 234,482 + -0.5 234,482 + -0.7 234,483 - -0.5 234,551 + +0.3 234,551 + -0.2 234,551 + +0.2 234,551 + -0.1 234,551 + -0.8 234,551 + +0.1 234,551 + -0.0 234,551 + +0.2 234,552 - -1.3
Or see this region's nucleotide sequence