Strain Fitness in Variovorax sp. SCN45 around GFF2746

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2745 and GFF2746 are separated by 14 nucleotidesGFF2746 and GFF2747 are separated by 76 nucleotidesGFF2747 and GFF2748 are separated by 183 nucleotides GFF2745 - FIG074102: hypothetical protein, at 179,318 to 180,460 GFF2745 GFF2746 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 180,475 to 180,999 GFF2746 GFF2747 - 17 kDa surface antigen, at 181,076 to 181,576 GFF2747 GFF2748 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 181,760 to 182,206 GFF2748 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.481 kb on + strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.482 kb on - strand, within GFF2745at 179.499 kb on + strand, within GFF2745at 179.773 kb on - strand, within GFF2745at 179.886 kb on + strand, within GFF2745at 179.887 kb on - strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.901 kb on + strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.902 kb on - strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.957 kb on + strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 179.958 kb on - strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.051 kb on + strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.052 kb on - strand, within GFF2745at 180.093 kb on + strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.094 kb on - strand, within GFF2745at 180.396 kb on + strandat 180.397 kb on - strandat 180.451 kb on + strandat 180.451 kb on + strandat 180.451 kb on + strandat 180.452 kb on - strandat 180.452 kb on - strandat 180.452 kb on - strandat 180.805 kb on + strand, within GFF2746at 180.805 kb on + strand, within GFF2746at 180.806 kb on - strand, within GFF2746at 180.806 kb on - strand, within GFF2746at 180.806 kb on - strand, within GFF2746at 180.823 kb on + strand, within GFF2746at 180.823 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.875 kb on + strand, within GFF2746at 180.876 kb on - strand, within GFF2746at 180.876 kb on - strand, within GFF2746at 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.077 kb on + strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.078 kb on - strandat 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.194 kb on + strand, within GFF2747at 181.195 kb on - strand, within GFF2747at 181.203 kb on + strand, within GFF2747at 181.204 kb on - strand, within GFF2747at 181.204 kb on - strand, within GFF2747at 181.343 kb on + strand, within GFF2747at 181.344 kb on - strand, within GFF2747at 181.417 kb on - strand, within GFF2747at 181.425 kb on + strand, within GFF2747at 181.425 kb on + strand, within GFF2747at 181.426 kb on - strand, within GFF2747at 181.426 kb on - strand, within GFF2747at 181.440 kb on + strand, within GFF2747at 181.489 kb on - strand, within GFF2747at 181.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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179,481 + GFF2745 0.14 -0.3
179,481 + GFF2745 0.14 -0.3
179,481 + GFF2745 0.14 -0.3
179,481 + GFF2745 0.14 -0.6
179,481 + GFF2745 0.14 -1.0
179,481 + GFF2745 0.14 -1.2
179,481 + GFF2745 0.14 +0.5
179,481 + GFF2745 0.14 +0.3
179,481 + GFF2745 0.14 -0.6
179,481 + GFF2745 0.14 -1.5
179,481 + GFF2745 0.14 -0.3
179,481 + GFF2745 0.14 +0.9
179,482 - GFF2745 0.14 +0.5
179,482 - GFF2745 0.14 +0.2
179,482 - GFF2745 0.14 -0.1
179,482 - GFF2745 0.14 -0.6
179,482 - GFF2745 0.14 -1.3
179,482 - GFF2745 0.14 -0.7
179,482 - GFF2745 0.14 -0.8
179,482 - GFF2745 0.14 -1.3
179,482 - GFF2745 0.14 +0.1
179,482 - GFF2745 0.14 +0.7
179,482 - GFF2745 0.14 -0.3
179,482 - GFF2745 0.14 -0.1
179,499 + GFF2745 0.16 -1.2
179,773 - GFF2745 0.40 -0.7
179,886 + GFF2745 0.50 -0.4
179,887 - GFF2745 0.50 -0.2
179,901 + GFF2745 0.51 -0.1
179,901 + GFF2745 0.51 -1.1
179,901 + GFF2745 0.51 -0.3
179,901 + GFF2745 0.51 -0.3
179,901 + GFF2745 0.51 -0.8
179,901 + GFF2745 0.51 -1.3
179,901 + GFF2745 0.51 -0.1
179,901 + GFF2745 0.51 -0.9
179,901 + GFF2745 0.51 -2.5
179,901 + GFF2745 0.51 +0.0
179,902 - GFF2745 0.51 -0.1
179,902 - GFF2745 0.51 +1.5
179,902 - GFF2745 0.51 +0.8
179,902 - GFF2745 0.51 -0.3
179,902 - GFF2745 0.51 -1.1
179,957 + GFF2745 0.56 +0.2
179,957 + GFF2745 0.56 +1.9
179,957 + GFF2745 0.56 -0.4
179,958 - GFF2745 0.56 -1.0
179,958 - GFF2745 0.56 -0.3
179,958 - GFF2745 0.56 +0.7
180,051 + GFF2745 0.64 +0.0
180,051 + GFF2745 0.64 -2.5
180,051 + GFF2745 0.64 -0.1
180,051 + GFF2745 0.64 -0.5
180,051 + GFF2745 0.64 +0.0
180,051 + GFF2745 0.64 -0.6
180,051 + GFF2745 0.64 -0.3
180,051 + GFF2745 0.64 -0.3
180,051 + GFF2745 0.64 -2.4
180,051 + GFF2745 0.64 +0.0
180,051 + GFF2745 0.64 -0.1
180,051 + GFF2745 0.64 -0.2
180,051 + GFF2745 0.64 +0.5
180,051 + GFF2745 0.64 +1.2
180,052 - GFF2745 0.64 -0.4
180,052 - GFF2745 0.64 -0.1
180,052 - GFF2745 0.64 +1.5
180,052 - GFF2745 0.64 -2.0
180,052 - GFF2745 0.64 +0.2
180,052 - GFF2745 0.64 +0.2
180,052 - GFF2745 0.64 -0.4
180,093 + GFF2745 0.68 -2.0
180,094 - GFF2745 0.68 -0.1
180,094 - GFF2745 0.68 +0.1
180,094 - GFF2745 0.68 -0.0
180,094 - GFF2745 0.68 -0.5
180,094 - GFF2745 0.68 +0.8
180,094 - GFF2745 0.68 -1.4
180,396 + -1.5
180,397 - +0.8
180,451 + -0.2
180,451 + -1.1
180,451 + -1.8
180,452 - -0.2
180,452 - -0.2
180,452 - -0.2
180,805 + GFF2746 0.63 -0.1
180,805 + GFF2746 0.63 -1.5
180,806 - GFF2746 0.63 -0.1
180,806 - GFF2746 0.63 -0.8
180,806 - GFF2746 0.63 +0.1
180,823 + GFF2746 0.66 -0.5
180,823 + GFF2746 0.66 -0.5
180,875 + GFF2746 0.76 -1.2
180,875 + GFF2746 0.76 -0.7
180,875 + GFF2746 0.76 -0.8
180,875 + GFF2746 0.76 -1.1
180,875 + GFF2746 0.76 -0.1
180,876 - GFF2746 0.76 +1.2
180,876 - GFF2746 0.76 -0.7
181,077 + +1.0
181,077 + -0.6
181,077 + +0.4
181,077 + -0.9
181,077 + -1.3
181,077 + +0.2
181,077 + -0.7
181,077 + -0.8
181,077 + -1.3
181,077 + +0.6
181,077 + +0.5
181,077 + -1.0
181,078 - +0.2
181,078 - -1.3
181,078 - -0.6
181,078 - -0.5
181,078 - -2.2
181,078 - -1.9
181,078 - +0.1
181,194 + GFF2747 0.24 +0.2
181,194 + GFF2747 0.24 -0.9
181,194 + GFF2747 0.24 +0.0
181,194 + GFF2747 0.24 +1.5
181,194 + GFF2747 0.24 -0.6
181,194 + GFF2747 0.24 +0.9
181,194 + GFF2747 0.24 -1.0
181,195 - GFF2747 0.24 +0.9
181,203 + GFF2747 0.25 +0.2
181,204 - GFF2747 0.26 +0.5
181,204 - GFF2747 0.26 -0.1
181,343 + GFF2747 0.53 -1.5
181,344 - GFF2747 0.53 -0.2
181,417 - GFF2747 0.68 -1.1
181,425 + GFF2747 0.70 +0.3
181,425 + GFF2747 0.70 -0.9
181,426 - GFF2747 0.70 -0.0
181,426 - GFF2747 0.70 +0.0
181,440 + GFF2747 0.73 -0.6
181,489 - GFF2747 0.82 -0.5
181,725 - +0.0

Or see this region's nucleotide sequence