Strain Fitness in Variovorax sp. SCN45 around GFF2727

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
159,804	-				+0.5
159,804	-				+0.0
159,815	+				-0.7
159,816	-				+0.5
159,816	-				-0.6
159,816	-				-0.8
159,816	-				-1.3
159,857	-				-0.5
159,857	-				-1.8
159,925	-				-1.8
159,925	-				-0.4
159,925	-				-0.3
159,944	+				-0.4
159,944	+				-0.2
160,019	-				-0.6
160,019	-				-0.2
160,038	+				-0.9
160,038	+				-0.6
160,039	-				+1.5
160,039	-				-0.1
160,202	+				-0.6
160,202	+				+0.2
160,265	+				+0.5
160,265	+				-1.7
160,274	+				-0.8
160,274	+				+0.4
160,274	+				+0.2
160,274	+				+0.2
160,274	+				-0.7
160,276	+				-0.1
160,276	+				+2.1
160,276	+				+0.5
160,290	-				+0.9
160,298	-				-1.1
160,298	-				-1.3
160,581	+				-0.7
160,581	+				-0.3
160,730	+				+0.0
160,737	+				+0.1
160,737	+				-0.2
160,737	+				+0.9
160,737	+				-0.4
160,779	+				-1.8
160,779	+				-0.2
160,779	+				-2.5
160,780	-				-0.7
160,780	-				-0.8
160,810	+				-0.5
160,810	+				-0.5
160,811	-				+0.3
160,811	-				-1.7
160,811	-				+0.3
160,811	-				+0.0
160,811	-				+0.4
160,811	-				+0.0
160,906	+		GFF2727	0.11	-1.4
161,152	+		GFF2727	0.33	+0.3
161,152	+		GFF2727	0.33	-0.4
161,152	+		GFF2727	0.33	+0.7
161,153	-		GFF2727	0.33	-0.8
161,153	-		GFF2727	0.33	-0.1
161,153	-		GFF2727	0.33	-0.8
161,153	-		GFF2727	0.33	-0.3
161,287	+		GFF2727	0.45	-0.3
161,288	-		GFF2727	0.45	+0.5
161,288	-		GFF2727	0.45	+0.1
161,317	+		GFF2727	0.48	-0.1
161,317	+		GFF2727	0.48	-1.1
161,317	+		GFF2727	0.48	-0.5
161,317	+		GFF2727	0.48	+0.5
161,317	+		GFF2727	0.48	+0.1
161,318	-		GFF2727	0.48	+0.7
161,318	-		GFF2727	0.48	+0.1
161,318	-		GFF2727	0.48	+0.9
161,318	-		GFF2727	0.48	-1.7
161,318	-		GFF2727	0.48	+0.6
161,341	+		GFF2727	0.50	-0.6
161,554	+		GFF2727	0.69	-0.4
161,554	+		GFF2727	0.69	-1.0
161,554	+		GFF2727	0.69	+0.1
161,554	+		GFF2727	0.69	-0.9
161,555	-		GFF2727	0.69	-0.2
161,555	-		GFF2727	0.69	-0.1
161,645	-		GFF2727	0.77	-1.1
161,875	-				+0.6
161,875	-				-0.2
161,875	-				-0.2
161,937	+				-3.4
161,937	+				-0.5
161,937	+				-0.9
161,937	+				+0.7
161,938	-				+1.1
161,938	-				+0.1
161,938	-				+0.3
161,938	-				-0.5
161,938	-				-0.8
161,938	-				+0.0
161,938	-				-0.1
161,939	+				-0.5
161,939	+				+1.5
161,939	+				-0.2
161,939	+				+0.5
161,939	+				+0.1
161,939	+				+1.1
161,939	+				-0.2
161,939	+				-0.4
161,939	+				+0.5
161,939	+				+1.8
161,939	+				+0.5
161,939	+				-0.7
161,939	+				-0.1
161,940	-				+1.5
161,940	-				-0.0
161,940	-				-0.8
161,940	-				+0.7
161,940	-				+0.4
161,940	-				+0.4
161,940	-				+0.9
161,940	-				-1.2
161,940	-				+0.3
161,940	-				-1.5
161,940	-				+0.4
161,940	-				-1.3
161,940	-				-0.5
161,940	-				-0.4
161,940	-				+0.1
161,973	+				-1.0
161,973	+				-0.3
161,973	+				+0.4
161,973	+				+0.2
161,973	+				+0.9
161,974	-				-0.4
161,974	-				-0.4
161,974	-				+0.6
161,974	-				-1.4
161,974	-				+0.2
162,017	+				+0.1
162,017	+				-0.5
162,017	+				-0.3
162,196	+		GFF2728	0.34	-0.3
162,196	+		GFF2728	0.34	-0.7
162,197	-		GFF2728	0.34	+0.1
162,197	-		GFF2728	0.34	+1.5
162,197	-		GFF2728	0.34	+0.7
162,197	-		GFF2728	0.34	-0.2
162,197	-		GFF2728	0.34	+1.2
162,537	+				-0.1
162,666	+				-0.1
162,666	+				+0.9
162,667	-				-0.7
162,667	-				+0.9
162,667	-				+0.4
162,667	-				+0.8
162,667	-				-0.0
162,667	-				-1.1
162,667	-				-0.1
162,726	+				-0.1
162,761	+				-1.1
162,761	+				-1.7
162,761	+				-1.2
162,761	+				-0.9
162,761	+				+1.3
162,762	-				-1.0
162,765	+				-0.2
162,765	+				-0.6
162,765	+				-0.7
162,765	+				-1.1
162,765	+				+0.1
162,765	+				-0.4
162,765	+				+0.2
162,765	+				-0.5
162,765	+				-0.5
162,765	+				-0.6
162,765	+				+0.1
162,765	+				-0.6
162,765	+				+0.4
162,765	+				-1.7
162,765	+				+0.2
162,765	+				-0.1
162,765	+				+1.3
162,766	-				-0.5
162,766	-				-0.2
162,766	-				-0.5
162,766	-				+0.9
162,766	-				-0.2
162,766	-				-0.5
162,766	-				-0.6
162,766	-				-0.2
162,766	-				-0.4
162,766	-				-0.6
162,766	-				-0.4
162,766	-				-0.0
162,766	-				+0.1
162,766	-				-0.8
162,766	-				-1.1
162,766	-				+0.3
162,766	-				-0.9
162,792	+				-1.5
162,792	+				-0.8
162,792	+				-0.0
162,793	-				+0.1
162,793	-				+1.0
162,793	-				-0.1
162,862	-				+0.0
162,862	-				+0.1
162,870	+				-0.6
162,870	+				+1.2
162,870	+				+0.1
162,870	+				+0.0
162,870	+				+2.1
162,870	+				+1.5
162,870	+				-0.7
162,871	-				-0.5
162,871	-				-0.5
162,871	-				+0.4
162,871	-				+0.7
162,871	-				+0.5
162,871	-				-0.3
162,871	-				-0.6
162,871	-				-0.7
162,871	-				+0.6