Strain Fitness in Variovorax sp. SCN45 around GFF2663

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2662 and GFF2663 are separated by 73 nucleotidesGFF2663 and GFF2664 overlap by 4 nucleotidesGFF2664 and GFF2665 are separated by 18 nucleotides GFF2662 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 84,553 to 85,506 GFF2662 GFF2663 - FIG022979: MoxR-like ATPases, at 85,580 to 86,500 GFF2663 GFF2664 - FIG002343: hypothetical protein, at 86,497 to 87,474 GFF2664 GFF2665 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 87,493 to 89,514 GFF2665 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 84.615 kb on - strandat 84.845 kb on + strand, within GFF2662at 84.899 kb on + strand, within GFF2662at 84.899 kb on + strand, within GFF2662at 84.900 kb on - strand, within GFF2662at 84.905 kb on + strand, within GFF2662at 84.905 kb on + strand, within GFF2662at 84.906 kb on - strand, within GFF2662at 84.906 kb on - strand, within GFF2662at 84.906 kb on - strand, within GFF2662at 84.906 kb on - strand, within GFF2662at 84.906 kb on - strand, within GFF2662at 85.490 kb on + strandat 85.490 kb on + strandat 85.491 kb on - strandat 85.491 kb on - strandat 85.491 kb on - strandat 85.491 kb on - strandat 85.491 kb on - strandat 85.519 kb on + strandat 85.519 kb on + strandat 85.520 kb on - strandat 85.520 kb on - strandat 85.551 kb on + strandat 85.552 kb on - strandat 85.552 kb on - strandat 85.552 kb on - strandat 85.552 kb on - strandat 85.552 kb on - strandat 85.573 kb on + strandat 85.574 kb on - strandat 85.574 kb on - strandat 85.574 kb on - strandat 85.579 kb on + strandat 85.579 kb on + strandat 85.579 kb on + strandat 85.579 kb on + strandat 85.580 kb on - strandat 85.586 kb on + strandat 85.599 kb on + strandat 85.599 kb on + strandat 85.600 kb on - strandat 85.600 kb on - strandat 85.611 kb on + strandat 85.612 kb on - strandat 85.621 kb on + strandat 85.621 kb on + strandat 85.621 kb on + strandat 85.622 kb on - strandat 85.826 kb on + strand, within GFF2663at 85.826 kb on + strand, within GFF2663at 85.826 kb on + strand, within GFF2663at 85.826 kb on + strand, within GFF2663at 85.826 kb on + strand, within GFF2663at 85.827 kb on - strand, within GFF2663at 85.827 kb on - strand, within GFF2663at 86.246 kb on + strand, within GFF2663at 86.246 kb on + strand, within GFF2663at 86.247 kb on - strand, within GFF2663at 86.247 kb on - strand, within GFF2663at 86.247 kb on - strand, within GFF2663at 86.247 kb on - strand, within GFF2663at 86.247 kb on - strand, within GFF2663at 86.369 kb on + strand, within GFF2663at 86.369 kb on + strand, within GFF2663at 86.369 kb on + strand, within GFF2663at 86.370 kb on - strand, within GFF2663at 86.370 kb on - strand, within GFF2663at 86.370 kb on - strand, within GFF2663at 86.370 kb on - strand, within GFF2663at 86.593 kb on + strandat 86.593 kb on + strandat 86.593 kb on + strandat 86.593 kb on + strandat 86.594 kb on - strandat 86.594 kb on - strandat 86.666 kb on - strand, within GFF2664at 86.684 kb on - strand, within GFF2664at 86.684 kb on - strand, within GFF2664at 86.848 kb on + strand, within GFF2664at 86.849 kb on - strand, within GFF2664at 87.053 kb on - strand, within GFF2664

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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84,615 - +0.0
84,845 + GFF2662 0.31 -0.1
84,899 + GFF2662 0.36 -0.3
84,899 + GFF2662 0.36 -0.1
84,900 - GFF2662 0.36 +1.5
84,905 + GFF2662 0.37 -0.6
84,905 + GFF2662 0.37 -1.0
84,906 - GFF2662 0.37 -1.4
84,906 - GFF2662 0.37 +0.0
84,906 - GFF2662 0.37 -0.4
84,906 - GFF2662 0.37 +0.0
84,906 - GFF2662 0.37 +0.3
85,490 + +0.1
85,490 + -1.1
85,491 - -0.5
85,491 - -0.7
85,491 - -0.8
85,491 - -0.8
85,491 - -0.5
85,519 + -0.7
85,519 + -0.7
85,520 - -0.1
85,520 - -0.0
85,551 + -0.7
85,552 - -0.5
85,552 - +0.1
85,552 - -0.8
85,552 - -0.5
85,552 - +0.6
85,573 + -0.2
85,574 - +1.3
85,574 - +0.5
85,574 - -0.6
85,579 + +1.1
85,579 + -0.4
85,579 + +0.2
85,579 + +0.1
85,580 - -0.6
85,586 + -0.0
85,599 + +0.5
85,599 + +0.0
85,600 - -0.6
85,600 - -0.2
85,611 + +0.2
85,612 - -1.1
85,621 + -0.4
85,621 + -0.7
85,621 + +0.8
85,622 - -0.4
85,826 + GFF2663 0.27 +0.2
85,826 + GFF2663 0.27 -0.1
85,826 + GFF2663 0.27 +0.2
85,826 + GFF2663 0.27 -0.6
85,826 + GFF2663 0.27 -0.4
85,827 - GFF2663 0.27 +0.3
85,827 - GFF2663 0.27 -0.1
86,246 + GFF2663 0.72 +0.5
86,246 + GFF2663 0.72 +1.1
86,247 - GFF2663 0.72 -0.6
86,247 - GFF2663 0.72 -0.4
86,247 - GFF2663 0.72 -0.5
86,247 - GFF2663 0.72 -0.3
86,247 - GFF2663 0.72 +0.9
86,369 + GFF2663 0.86 +0.0
86,369 + GFF2663 0.86 -0.6
86,369 + GFF2663 0.86 +1.1
86,370 - GFF2663 0.86 -0.5
86,370 - GFF2663 0.86 -0.3
86,370 - GFF2663 0.86 +0.2
86,370 - GFF2663 0.86 -2.0
86,593 + -1.7
86,593 + -1.9
86,593 + +0.5
86,593 + -0.0
86,594 - +0.8
86,594 - +0.2
86,666 - GFF2664 0.17 -1.2
86,684 - GFF2664 0.19 -0.7
86,684 - GFF2664 0.19 -0.1
86,848 + GFF2664 0.36 -0.8
86,849 - GFF2664 0.36 -0.2
87,053 - GFF2664 0.57 -0.4

Or see this region's nucleotide sequence