Strain Fitness in Variovorax sp. SCN45 around GFF2618

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
20,722	+		GFF2616	0.39	-0.0
20,729	+		GFF2616	0.41	+0.4
20,729	+		GFF2616	0.41	+0.3
20,730	-		GFF2616	0.41	-0.1
20,730	-		GFF2616	0.41	-1.8
20,731	+		GFF2616	0.41	-0.4
20,735	+		GFF2616	0.42	+0.0
20,943	+		GFF2616	0.85	-0.1
20,944	-		GFF2616	0.85	+0.5
21,006	-				+0.7
21,029	+				+0.5
21,030	-				+0.4
21,030	-				-1.1
21,030	-				-0.4
21,048	+		GFF2617	0.12	-0.5
21,048	+		GFF2617	0.12	-0.3
21,202	+				-1.1
21,202	+				-0.3
21,202	+				-0.7
21,202	+				+0.4
21,202	+				-0.7
21,202	+				-0.9
21,202	+				+0.8
21,202	+				-1.1
21,202	+				+0.4
21,203	-				-0.2
21,203	-				+1.2
21,204	+				+0.4
21,204	+				-0.6
21,204	+				-0.4
21,204	+				+0.9
21,205	-				-0.2
21,205	-				-0.7
21,205	-				-0.0
21,205	-				-1.9
21,205	-				-0.3
21,210	+				-0.2
21,210	+				+0.3
21,210	+				+0.5
21,210	+				+0.9
21,211	-				+1.5
21,211	-				-0.1
21,262	+				+0.3
21,262	+				-0.4
21,262	+				-0.8
21,262	+				-1.0
21,262	+				-0.4
21,262	+				-0.1
21,263	-				+0.1
21,263	-				-1.0
21,263	-				-0.2
21,275	+				+2.6
21,275	+				+0.3
21,275	+				-0.5
21,275	+				+0.4
21,275	+				+0.9
21,276	-				-2.0
21,276	-				-0.1
21,276	-				-0.4
21,276	-				-1.0
21,276	-				+0.5
21,276	-				-1.2
21,276	-				-0.3
21,276	-				-0.0
21,276	-				-0.7
21,276	-				+0.0
21,276	-				-0.7
21,277	+				-0.3
21,278	-				-0.7
21,340	+				+0.7
21,405	+				+0.3
21,405	+				+0.5
21,406	-				-0.6
21,406	-				-1.7
21,426	+				+0.0
21,426	+				-0.4
21,427	-				+0.7
21,461	-				-0.0
21,498	+				-0.8
21,498	+				-0.3
21,498	+				+0.2
21,499	-				-2.4
21,499	-				-0.4
21,499	-				-0.7
21,499	-				-0.5
21,499	-				-0.4
21,501	+				-0.6
21,502	-				-1.1
21,502	-				-0.3
21,502	-				+0.1
21,507	+				+0.6
21,516	+				-0.0
21,517	-				-0.2
21,517	-				+0.8
21,517	-				-0.7
21,517	-				-0.8
21,561	+				+0.5
21,561	+				-0.7
21,606	+				+0.6
21,606	+				-0.5
21,606	+				+0.0
21,606	+				+0.1
21,607	-				-0.5
21,607	-				-0.3
21,607	-				+1.7
21,607	-				-0.1
21,607	-				-0.7
21,607	-				-0.6
21,661	+				+1.2
21,662	-				+1.5
21,662	-				-0.2
21,671	-				-0.0
21,763	+		GFF2618	0.26	-1.5
21,786	+		GFF2618	0.32	+0.1
21,787	-		GFF2618	0.33	+0.3
21,787	-		GFF2618	0.33	-2.1
21,879	+		GFF2618	0.56	-0.3
21,917	+		GFF2618	0.66	-0.8
21,948	-		GFF2618	0.74	-0.7
22,066	+				-1.0
22,068	+				-0.2
22,069	-				+0.2
22,069	-				-0.6
22,070	+				-0.3
22,070	+				-0.2
22,070	+				-0.8
22,070	+				+0.0
22,070	+				-0.5
22,070	+				-1.0
22,070	+				+0.1
22,071	-				+0.5
22,071	-				-0.6
22,071	-				+0.1
22,071	-				-0.0
22,071	-				-0.2
22,111	+				+1.2
22,111	+				+0.2
22,111	+				+0.1
22,111	+				+0.0
22,111	+				-0.8
22,111	+				+0.5
22,111	+				-0.5
22,111	+				-0.8
22,112	-				+1.1
22,112	-				-1.2
22,112	-				-0.5
22,153	+				+0.8
22,153	+				-0.4
22,153	+				-1.1
22,153	+				-0.8
22,154	-				+0.0
22,154	-				-1.2
22,154	-				-0.5
22,154	-				-0.6
22,223	-				+0.9
22,250	-				+1.0
22,318	+				-0.7
22,318	+				-0.6
22,318	+				+0.2
22,318	+				-0.1
22,318	+				+1.3
22,318	+				-2.7
22,318	+				-0.9
22,318	+				+0.2
22,318	+				+0.8
22,318	+				-1.0
22,319	-				-0.1
22,319	-				+0.1
22,319	-				+0.8
22,319	-				-0.8
22,319	-				-1.1
22,368	+				+0.5
22,369	-				+1.0
22,369	-				-1.5
22,459	+				-0.1
22,482	+				+1.4
22,516	+				+0.1
22,516	+				-0.0
22,516	+				-0.1
22,516	+				+1.0
22,517	-				-0.4
22,517	-				-0.3
22,517	-				+0.1
22,517	-				+0.9
22,517	-				-0.4
22,529	+				-0.1
22,529	+				-0.5
22,529	+				-0.8
22,529	+				+0.3
22,530	-				-0.3
22,530	-				+0.4
22,530	-				-0.4
22,555	-		GFF2619	0.10	+0.3
22,555	-		GFF2619	0.10	-2.0
22,555	-		GFF2619	0.10	-0.9
22,555	-		GFF2619	0.10	+0.3
22,555	-		GFF2619	0.10	+0.7
22,555	-		GFF2619	0.10	+0.6
22,555	-		GFF2619	0.10	+0.0
22,555	-		GFF2619	0.10	+0.5
22,555	-		GFF2619	0.10	+0.0
22,555	-		GFF2619	0.10	+0.5
22,555	-		GFF2619	0.10	+0.4
22,555	-		GFF2619	0.10	+0.2
22,555	-		GFF2619	0.10	-0.8
22,555	-		GFF2619	0.10	+0.2
22,555	-		GFF2619	0.10	-0.1
22,558	-		GFF2619	0.11	+0.8
22,572	+		GFF2619	0.11	-0.1
22,572	+		GFF2619	0.11	+0.3
22,572	+		GFF2619	0.11	-0.8
22,572	+		GFF2619	0.11	-0.6
22,572	+		GFF2619	0.11	+0.3
22,572	+		GFF2619	0.11	+0.8
22,572	+		GFF2619	0.11	-0.9
22,572	+		GFF2619	0.11	-1.5
22,572	+		GFF2619	0.11	-0.1
22,572	+		GFF2619	0.11	+0.4
22,572	+		GFF2619	0.11	-0.1
22,572	+		GFF2619	0.11	+1.3
22,572	-		GFF2619	0.11	-1.2
22,573	-		GFF2619	0.11	-1.5
22,573	-		GFF2619	0.11	+0.4
22,573	-		GFF2619	0.11	+0.5
22,573	-		GFF2619	0.11	-0.2
22,573	-		GFF2619	0.11	-0.3
22,573	-		GFF2619	0.11	+1.0
22,573	-		GFF2619	0.11	-0.3
22,573	-		GFF2619	0.11	+0.5
22,573	-		GFF2619	0.11	+0.7
22,573	-		GFF2619	0.11	-0.1
22,573	-		GFF2619	0.11	-1.4
22,573	-		GFF2619	0.11	+0.0
22,619	-		GFF2619	0.12	-2.1
22,619	-		GFF2619	0.12	-0.3
22,686	+		GFF2619	0.13	-1.1
22,686	+		GFF2619	0.13	+0.5
22,686	+		GFF2619	0.13	-1.0
22,686	+		GFF2619	0.13	-0.6
22,686	+		GFF2619	0.13	+2.5
22,686	+		GFF2619	0.13	+0.5
22,686	+		GFF2619	0.13	-0.8
22,686	+		GFF2619	0.13	+0.2
22,686	+		GFF2619	0.13	+0.5
22,686	+		GFF2619	0.13	-0.7
22,686	+		GFF2619	0.13	-0.6
22,739	-		GFF2619	0.14	-1.3
22,758	+		GFF2619	0.15	-0.0
22,758	+		GFF2619	0.15	+0.4
22,758	+		GFF2619	0.15	-0.4
22,758	+		GFF2619	0.15	-0.8
22,758	+		GFF2619	0.15	-0.3
22,758	+		GFF2619	0.15	-1.4
22,758	+		GFF2619	0.15	+0.5
22,758	+		GFF2619	0.15	-0.7
22,758	+		GFF2619	0.15	+0.4
22,758	+		GFF2619	0.15	+0.1
22,758	+		GFF2619	0.15	+0.2
22,759	-		GFF2619	0.15	-0.1
22,817	+		GFF2619	0.16	-0.3
22,817	+		GFF2619	0.16	+0.7
22,817	+		GFF2619	0.16	+0.2
22,818	-		GFF2619	0.16	-0.3
22,818	-		GFF2619	0.16	+0.8
22,818	-		GFF2619	0.16	-0.3
22,839	+		GFF2619	0.16	-0.2
22,839	+		GFF2619	0.16	-0.1
22,839	+		GFF2619	0.16	-0.9
22,839	+		GFF2619	0.16	-1.3
22,839	+		GFF2619	0.16	-0.8
22,839	+		GFF2619	0.16	-0.6
22,839	+		GFF2619	0.16	-1.7
22,840	-		GFF2619	0.16	-0.8
22,840	-		GFF2619	0.16	-0.2
22,840	-		GFF2619	0.16	+0.0
22,953	+		GFF2619	0.19	-0.8
22,953	+		GFF2619	0.19	-0.5
22,953	+		GFF2619	0.19	+0.2
22,953	+		GFF2619	0.19	+0.5
22,953	+		GFF2619	0.19	-0.1
22,953	+		GFF2619	0.19	-1.0
22,953	+		GFF2619	0.19	-0.2
22,953	+		GFF2619	0.19	-0.4
22,953	+		GFF2619	0.19	+0.8
22,953	+		GFF2619	0.19	+0.2
22,953	+		GFF2619	0.19	+1.5
22,953	+		GFF2619	0.19	+0.0
22,954	-		GFF2619	0.19	+0.1
22,954	-		GFF2619	0.19	-0.3
22,954	-		GFF2619	0.19	+0.2
22,954	-		GFF2619	0.19	+0.5
22,954	-		GFF2619	0.19	-0.2
22,954	-		GFF2619	0.19	+0.0
22,954	-		GFF2619	0.19	-0.1
22,954	-		GFF2619	0.19	-0.0
22,954	-		GFF2619	0.19	+0.3
22,954	-		GFF2619	0.19	+0.9
22,954	-		GFF2619	0.19	+0.6
22,954	-		GFF2619	0.19	+0.2
22,954	-		GFF2619	0.19	-0.7