Strain Fitness in Variovorax sp. SCN45 around GFF2603

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
7,706	+		GFF2602	0.18	-0.5
7,707	-		GFF2602	0.18	-1.0
7,707	-		GFF2602	0.18	-0.8
7,709	+		GFF2602	0.18	-0.4
7,766	+		GFF2602	0.27	-0.0
7,779	+		GFF2602	0.29	+0.6
8,042	+		GFF2602	0.68	-0.9
8,043	-		GFF2602	0.68	+0.1
8,090	+		GFF2602	0.75	-0.9
8,090	+		GFF2602	0.75	-2.0
8,090	+		GFF2602	0.75	-0.1
8,090	+		GFF2602	0.75	-0.5
8,090	+		GFF2602	0.75	-0.5
8,090	+		GFF2602	0.75	-0.8
8,090	+		GFF2602	0.75	-0.5
8,090	+		GFF2602	0.75	-0.1
8,091	-		GFF2602	0.75	+0.3
8,091	-		GFF2602	0.75	-0.9
8,091	-		GFF2602	0.75	-0.6
8,091	-		GFF2602	0.75	-0.4
8,091	-		GFF2602	0.75	+0.4
8,091	-		GFF2602	0.75	-0.7
8,115	+		GFF2602	0.79	+0.2
8,147	+		GFF2602	0.84	+0.2
8,234	+				+0.2
8,234	+				+0.1
8,235	-				+0.3
8,666	+		GFF2603	0.34	-0.0
8,666	+		GFF2603	0.34	+0.7
8,667	-		GFF2603	0.34	-0.0
8,667	-		GFF2603	0.34	-0.4
8,667	-		GFF2603	0.34	-0.5
8,744	+		GFF2603	0.42	+1.3
8,744	+		GFF2603	0.42	+0.3
8,744	+		GFF2603	0.42	+2.1
8,744	+		GFF2603	0.42	-0.5
8,744	+		GFF2603	0.42	-0.5
8,745	-		GFF2603	0.42	+2.1
8,745	-		GFF2603	0.42	+0.9
8,745	-		GFF2603	0.42	-0.5
8,795	+		GFF2603	0.47	+0.5
8,825	+		GFF2603	0.50	+0.3
8,825	+		GFF2603	0.50	-0.1
8,826	-		GFF2603	0.50	+0.4
8,826	-		GFF2603	0.50	-0.0
8,826	-		GFF2603	0.50	+0.0
8,870	+		GFF2603	0.54	-0.1
8,871	-		GFF2603	0.54	-1.1
9,116	+		GFF2603	0.78	+0.5
9,117	-		GFF2603	0.78	-0.5
9,348	+				+0.0
9,349	-				+0.2
9,349	-				-0.8
9,760	+		GFF2604	0.60	-0.8
9,760	+		GFF2604	0.60	+0.5
10,006	+				+0.0
10,006	+				+0.7
10,007	-				+0.0
10,007	-				-0.1
10,007	-				-1.3
10,007	-				+0.9
10,007	-				+0.6
10,024	+				+1.5
10,024	+				-1.3
10,025	-				+0.1
10,025	-				-1.4
10,025	-				-0.1
10,180	+		GFF2605	0.10	+0.3
10,265	-		GFF2605	0.16	-0.3