Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2556 and GFF2557 are separated by 73 nucleotides GFF2557 and GFF2558 are separated by 97 nucleotides GFF2558 and GFF2559 overlap by 4 nucleotides GFF2559 and GFF2560 overlap by 14 nucleotides GFF2560 and GFF2561 are separated by 35 nucleotides
GFF2556 - UPF0337 family protein, at 618,065 to 618,262
GFF2556
GFF2557 - transport-associated, at 618,336 to 618,854
GFF2557
GFF2558 - DNA protection during starvation protein, at 618,952 to 619,512
GFF2558
GFF2559 - hypothetical protein, at 619,509 to 620,021
GFF2559
GFF2560 - FIG00932643: hypothetical protein, at 620,008 to 620,391
GFF2560
GFF2561 - FIG00931134: hypothetical protein, at 620,427 to 620,801
GFF2561
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1 at 618.020 kb on - strand at 618.020 kb on - strand at 618.032 kb on + strand at 618.032 kb on + strand at 618.032 kb on + strand at 618.032 kb on + strand at 618.033 kb on - strand at 618.033 kb on - strand at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.203 kb on + strand, within GFF2556 at 618.204 kb on - strand, within GFF2556 at 618.204 kb on - strand, within GFF2556 at 618.204 kb on - strand, within GFF2556 at 618.204 kb on - strand, within GFF2556 at 618.219 kb on - strand, within GFF2556 at 618.500 kb on + strand, within GFF2557 at 618.500 kb on + strand, within GFF2557 at 618.708 kb on - strand, within GFF2557 at 618.942 kb on + strand at 618.942 kb on + strand at 619.070 kb on + strand, within GFF2558 at 619.071 kb on - strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.142 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.307 kb on + strand, within GFF2558 at 619.308 kb on - strand, within GFF2558 at 619.308 kb on - strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.319 kb on + strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.395 kb on - strand, within GFF2558 at 619.590 kb on + strand, within GFF2559 at 619.590 kb on + strand, within GFF2559 at 619.591 kb on - strand, within GFF2559 at 619.591 kb on - strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.702 kb on + strand, within GFF2559 at 619.703 kb on - strand, within GFF2559 at 619.703 kb on - strand, within GFF2559 at 619.867 kb on + strand, within GFF2559 at 619.868 kb on - strand, within GFF2559 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.324 kb on + strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.325 kb on - strand, within GFF2560 at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.431 kb on + strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand at 620.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 618,020 - -0.3 618,020 - -0.4 618,032 + +0.2 618,032 + -0.2 618,032 + +0.5 618,032 + -0.6 618,033 - -0.3 618,033 - -0.1 618,203 + GFF2556 0.70 -0.3 618,203 + GFF2556 0.70 -0.2 618,203 + GFF2556 0.70 +0.1 618,203 + GFF2556 0.70 -1.0 618,203 + GFF2556 0.70 -0.2 618,203 + GFF2556 0.70 +0.2 618,203 + GFF2556 0.70 +0.1 618,203 + GFF2556 0.70 +1.1 618,204 - GFF2556 0.70 +0.7 618,204 - GFF2556 0.70 -0.4 618,204 - GFF2556 0.70 -1.0 618,204 - GFF2556 0.70 -0.2 618,219 - GFF2556 0.78 +0.3 618,500 + GFF2557 0.32 -0.8 618,500 + GFF2557 0.32 -1.1 618,708 - GFF2557 0.72 +0.3 618,942 + +0.7 618,942 + +0.6 619,070 + GFF2558 0.21 -1.4 619,071 - GFF2558 0.21 -0.5 619,142 + GFF2558 0.34 -0.7 619,142 + GFF2558 0.34 -1.7 619,142 + GFF2558 0.34 -0.8 619,307 + GFF2558 0.63 +0.4 619,307 + GFF2558 0.63 -0.3 619,307 + GFF2558 0.63 -0.7 619,307 + GFF2558 0.63 +0.7 619,307 + GFF2558 0.63 -0.7 619,307 + GFF2558 0.63 +0.0 619,307 + GFF2558 0.63 -0.5 619,307 + GFF2558 0.63 -0.1 619,308 - GFF2558 0.63 -1.9 619,308 - GFF2558 0.63 +1.2 619,319 + GFF2558 0.65 +0.1 619,319 + GFF2558 0.65 -0.5 619,319 + GFF2558 0.65 -0.0 619,395 - GFF2558 0.79 +0.4 619,395 - GFF2558 0.79 +0.1 619,395 - GFF2558 0.79 -0.8 619,395 - GFF2558 0.79 -2.2 619,590 + GFF2559 0.16 -0.9 619,590 + GFF2559 0.16 -0.5 619,591 - GFF2559 0.16 +0.7 619,591 - GFF2559 0.16 -0.4 619,702 + GFF2559 0.38 -0.1 619,702 + GFF2559 0.38 +0.0 619,702 + GFF2559 0.38 -1.0 619,702 + GFF2559 0.38 +0.1 619,703 - GFF2559 0.38 +1.1 619,703 - GFF2559 0.38 +0.4 619,867 + GFF2559 0.70 -0.2 619,868 - GFF2559 0.70 +0.3 620,324 + GFF2560 0.82 +0.7 620,324 + GFF2560 0.82 -1.2 620,324 + GFF2560 0.82 -0.3 620,324 + GFF2560 0.82 -0.8 620,324 + GFF2560 0.82 +0.8 620,324 + GFF2560 0.82 +0.3 620,325 - GFF2560 0.83 -0.4 620,325 - GFF2560 0.83 -0.4 620,325 - GFF2560 0.83 -0.3 620,325 - GFF2560 0.83 +0.8 620,325 - GFF2560 0.83 +0.4 620,325 - GFF2560 0.83 -1.0 620,325 - GFF2560 0.83 +0.2 620,325 - GFF2560 0.83 +0.2 620,325 - GFF2560 0.83 -0.3 620,325 - GFF2560 0.83 -0.2 620,431 + +0.4 620,431 + -0.1 620,431 + +1.0 620,431 + -0.9 620,431 + -0.1 620,431 + +0.1 620,432 - +1.3 620,432 - -0.3 620,432 - +0.0 620,432 - -0.6 620,432 - -0.2 620,432 - +0.4
Or see this region's nucleotide sequence