Strain Fitness in Variovorax sp. SCN45 around GFF2412

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
463,313	-		GFF2410	0.77	-0.9
463,375	+		GFF2410	0.87	+1.0
463,375	+		GFF2410	0.87	+1.0
463,376	-		GFF2410	0.87	+0.3
463,405	+				-0.7
463,405	+				-1.2
463,405	+				+0.1
463,405	+				-0.2
463,405	+				-1.3
463,406	-				+1.4
463,406	-				-0.4
463,426	+				-1.0
463,426	+				-0.3
463,427	-				+0.2
463,427	-				-1.3
463,427	-				-0.9
463,438	+				-1.5
463,450	+				+1.5
463,451	-				+0.0
463,451	-				-2.2
463,492	-				-0.3
463,492	-				-0.0
463,493	+				+0.3
463,493	+				+1.1
463,493	+				+0.1
463,493	+				-0.2
463,493	+				-1.1
463,493	+				+0.4
463,493	+				-0.4
463,493	+				-0.4
463,504	-				-0.5
463,504	-				+0.0
464,116	-		GFF2412	0.38	+0.9
464,394	+		GFF2412	0.88	+1.5
464,459	-				+1.4
464,459	-				-0.1
464,520	+				-0.0
464,520	+				+0.4
464,534	-				+0.4
464,543	+				+0.1
464,544	+				+0.5
464,544	+				-0.1
464,546	+				-0.9
464,995	+		GFF2413	0.35	+1.3
465,040	+		GFF2413	0.39	-0.6
465,220	+		GFF2413	0.57	+1.0
465,299	-		GFF2413	0.66	-1.1