Strain Fitness in Variovorax sp. SCN45 around GFF2329

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2327 and GFF2328 are separated by 51 nucleotidesGFF2328 and GFF2329 are separated by 31 nucleotidesGFF2329 and GFF2330 are separated by 17 nucleotides GFF2327 - Hydrolase, alpha/beta fold family, at 378,726 to 379,493 GFF2327 GFF2328 - no description, at 379,545 to 380,186 GFF2328 GFF2329 - Phosphoglycerate mutase (EC 5.4.2.11), at 380,218 to 380,916 GFF2329 GFF2330 - FOG: TPR repeat, at 380,934 to 382,289 GFF2330 Position (kb) 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 379.419 kb on + strandat 379.419 kb on + strandat 379.419 kb on + strandat 379.471 kb on + strandat 379.471 kb on + strandat 379.471 kb on + strandat 379.472 kb on - strandat 379.472 kb on - strandat 379.472 kb on - strandat 379.472 kb on - strandat 379.512 kb on + strandat 379.512 kb on + strandat 379.512 kb on + strandat 379.512 kb on + strandat 379.512 kb on + strandat 379.513 kb on - strandat 379.638 kb on + strand, within GFF2328at 379.648 kb on - strand, within GFF2328at 379.648 kb on - strand, within GFF2328at 379.648 kb on - strand, within GFF2328at 379.776 kb on + strand, within GFF2328at 379.776 kb on + strand, within GFF2328at 379.776 kb on + strand, within GFF2328at 379.776 kb on + strand, within GFF2328at 379.777 kb on - strand, within GFF2328at 379.777 kb on - strand, within GFF2328at 379.884 kb on + strand, within GFF2328at 379.965 kb on + strand, within GFF2328at 379.974 kb on + strand, within GFF2328at 379.974 kb on + strand, within GFF2328at 379.974 kb on + strand, within GFF2328at 379.974 kb on + strand, within GFF2328at 379.974 kb on + strand, within GFF2328at 379.974 kb on + strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.975 kb on - strand, within GFF2328at 379.983 kb on + strand, within GFF2328at 379.983 kb on + strand, within GFF2328at 379.984 kb on - strand, within GFF2328at 379.984 kb on - strand, within GFF2328at 380.034 kb on + strand, within GFF2328at 380.034 kb on + strand, within GFF2328at 380.034 kb on + strand, within GFF2328at 380.035 kb on - strand, within GFF2328at 380.035 kb on - strand, within GFF2328at 380.035 kb on - strand, within GFF2328at 380.036 kb on + strand, within GFF2328at 380.036 kb on + strand, within GFF2328at 380.037 kb on - strand, within GFF2328at 380.662 kb on + strand, within GFF2329at 380.662 kb on + strand, within GFF2329at 380.663 kb on - strand, within GFF2329at 380.881 kb on + strandat 380.881 kb on + strandat 380.881 kb on + strandat 380.881 kb on + strandat 380.881 kb on + strandat 380.882 kb on - strandat 380.882 kb on - strandat 380.882 kb on - strandat 380.882 kb on - strandat 380.972 kb on - strandat 381.095 kb on - strand, within GFF2330at 381.095 kb on - strand, within GFF2330at 381.341 kb on - strand, within GFF2330at 381.341 kb on - strand, within GFF2330at 381.346 kb on + strand, within GFF2330at 381.346 kb on + strand, within GFF2330at 381.346 kb on + strand, within GFF2330at 381.347 kb on - strand, within GFF2330at 381.347 kb on - strand, within GFF2330at 381.347 kb on - strand, within GFF2330at 381.398 kb on - strand, within GFF2330at 381.490 kb on + strand, within GFF2330at 381.490 kb on + strand, within GFF2330at 381.491 kb on - strand, within GFF2330at 381.491 kb on - strand, within GFF2330at 381.523 kb on + strand, within GFF2330at 381.523 kb on + strand, within GFF2330at 381.781 kb on + strand, within GFF2330at 381.808 kb on + strand, within GFF2330at 381.808 kb on + strand, within GFF2330at 381.809 kb on - strand, within GFF2330at 381.809 kb on - strand, within GFF2330at 381.809 kb on - strand, within GFF2330

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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379,419 + +0.9
379,419 + -0.4
379,419 + -1.5
379,471 + -0.2
379,471 + -0.4
379,471 + -0.7
379,472 - -0.6
379,472 - -1.0
379,472 - -0.9
379,472 - -0.1
379,512 + -0.4
379,512 + -0.2
379,512 + -0.2
379,512 + -0.1
379,512 + +0.0
379,513 - -0.2
379,638 + GFF2328 0.14 +0.9
379,648 - GFF2328 0.16 -0.4
379,648 - GFF2328 0.16 +0.6
379,648 - GFF2328 0.16 +0.4
379,776 + GFF2328 0.36 +0.3
379,776 + GFF2328 0.36 -0.8
379,776 + GFF2328 0.36 +0.3
379,776 + GFF2328 0.36 +1.2
379,777 - GFF2328 0.36 -1.2
379,777 - GFF2328 0.36 +0.5
379,884 + GFF2328 0.53 +0.3
379,965 + GFF2328 0.65 +0.3
379,974 + GFF2328 0.67 -0.8
379,974 + GFF2328 0.67 -0.4
379,974 + GFF2328 0.67 -0.7
379,974 + GFF2328 0.67 -0.4
379,974 + GFF2328 0.67 -0.7
379,974 + GFF2328 0.67 -0.1
379,975 - GFF2328 0.67 +0.1
379,975 - GFF2328 0.67 +2.1
379,975 - GFF2328 0.67 -1.6
379,975 - GFF2328 0.67 +0.9
379,975 - GFF2328 0.67 +1.2
379,975 - GFF2328 0.67 +0.7
379,975 - GFF2328 0.67 +2.3
379,983 + GFF2328 0.68 +0.5
379,983 + GFF2328 0.68 -0.4
379,984 - GFF2328 0.68 -0.6
379,984 - GFF2328 0.68 -1.9
380,034 + GFF2328 0.76 -0.6
380,034 + GFF2328 0.76 -0.7
380,034 + GFF2328 0.76 +0.7
380,035 - GFF2328 0.76 +0.7
380,035 - GFF2328 0.76 -2.0
380,035 - GFF2328 0.76 +0.7
380,036 + GFF2328 0.76 -0.8
380,036 + GFF2328 0.76 +0.1
380,037 - GFF2328 0.77 +0.9
380,662 + GFF2329 0.64 -1.0
380,662 + GFF2329 0.64 -1.8
380,663 - GFF2329 0.64 +0.5
380,881 + -0.4
380,881 + -0.8
380,881 + +0.0
380,881 + +1.1
380,881 + -1.2
380,882 - -0.6
380,882 - -0.1
380,882 - +0.4
380,882 - +0.5
380,972 - +0.5
381,095 - GFF2330 0.12 +0.2
381,095 - GFF2330 0.12 -0.4
381,341 - GFF2330 0.30 -0.1
381,341 - GFF2330 0.30 -0.2
381,346 + GFF2330 0.30 -0.6
381,346 + GFF2330 0.30 +0.2
381,346 + GFF2330 0.30 +0.1
381,347 - GFF2330 0.30 +0.3
381,347 - GFF2330 0.30 -0.2
381,347 - GFF2330 0.30 -1.1
381,398 - GFF2330 0.34 -0.3
381,490 + GFF2330 0.41 -0.6
381,490 + GFF2330 0.41 -1.2
381,491 - GFF2330 0.41 -0.5
381,491 - GFF2330 0.41 -0.7
381,523 + GFF2330 0.43 +0.3
381,523 + GFF2330 0.43 +0.7
381,781 + GFF2330 0.62 -1.7
381,808 + GFF2330 0.64 +0.4
381,808 + GFF2330 0.64 +0.1
381,809 - GFF2330 0.65 -0.6
381,809 - GFF2330 0.65 -0.8
381,809 - GFF2330 0.65 -0.5

Or see this region's nucleotide sequence